Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq283574 95.1 1e-14 seq162555 93.3 3e-14 >seq283574 Length=3212210 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| |||||| ||||| |||||| | | || || || |||||||| ||||| |||| Sbjct 1553880 TGGAGCGTTTCAGCCAGGAAGTGCAAATCCCAGAAGCTCGCTGTTTCTATGGCTTTCAGA 1553939 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || || |||||||| ||||| |||||||||||| | || || || || ||||||| Sbjct 1553940 TTTTAATTGAGAATGTTCACTCAGAGATGTACAGTTTGCTGATAGACACTTACATCA 1553996 >seq162555 Length=1600 Score = 93.3 bits (102), Expect = 3e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | ||||| |||||||| | Sbjct 655 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGCTGCTCCTCCTT 596 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || || ||| || ||||||||||| || |||||| || ||||||| Sbjct 595 CCCAGTG-TTCTTCTTCAGGTCAAGAAACTCAAAGATATCCAAATGCCACGGCTCCAGGT 537 Query 66459 AGATGGCGAA 66468 ||||||| || Sbjct 536 AGATGGCAAA 527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396179222916800