Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq97706 192 9e-47 seq84050 168 1e-39 seq53396 165 1e-38 seq51730 161 1e-37 seq80719 152 8e-35 seq64167 150 3e-34 seq86494 109 8e-22 seq92603 95.1 2e-17 seq65167 86.0 9e-15 seq48951 86.0 9e-15 >seq97706 Length=860129 Score = 192 bits (212), Expect = 9e-47 Identities = 186/234 (79%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||| | Sbjct 50446 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 50389 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 50388 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 50329 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||||||| ||| | | || || ||| |||||||||||||||||| Sbjct 50328 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 50269 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 50268 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 50216 >seq84050 Length=655544 Score = 168 bits (186), Expect = 1e-39 Identities = 183/235 (78%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| |||| | | |||||| |||||| | Sbjct 99790 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGATCCACACTTACTGGGAATT-C 99847 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 99848 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 99907 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||||||| ||| | | || || ||| | |||||||||||| |||||| Sbjct 99908 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGAGTCAATCAGTGTAGCGTGCGTGCA 99967 Query 180 GCC-CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| ||| |||||||||||||| ||||||||||| ||| ||||| || ||||| Sbjct 99968 GCCGCAG-ACATCTAAGGGCATTACAGACCTGTTGTTG-CTCAATCTCGGGTGGC 100020 >seq53396 Length=9355083 Score = 165 bits (182), Expect = 1e-38 Identities = 165/210 (79%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || | ||||||||||| ||||| ||| |||||| |||||| | Sbjct 1104532 GTACAAAGGGCAGGGACTTAATTAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 1104589 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| || || Sbjct 1104590 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACAGGTT 1104649 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||||||| ||| | | || || ||| ||||||||||||||||| Sbjct 1104650 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGCCAGTGTAGCGCGCGTGCA 1104709 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCT 209 |||| | |||||||||||||||||||| || Sbjct 1104710 GCCCCGGACATCTAAGGGCATCACAGAACT 1104739 >seq51730 Length=3960093 Score = 161 bits (178), Expect = 1e-37 Identities = 182/238 (76%), Gaps = 12/238 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||| | Sbjct 1290783 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 1290840 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116 |||||| | | || ||||||||| | |||| |||||| |||| ||||| | Sbjct 1290841 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCACATCAC----AAATGGGGTTCAACG 1290896 Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 |||||| ||||||||| ||| | | || || ||| ||||||||||||||| Sbjct 1290897 GGTTACCCACACCTGTCGGGGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCGCG 1290956 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| |||| | || | ||||||| ||||||||||||||||| ||||| || ||||| Sbjct 1290957 TGCAGCCCCGGACGTGTAAGGGCCTCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 1291013 >seq80719 Length=1996707 Score = 152 bits (168), Expect = 8e-35 Identities = 174/226 (77%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||||| |||||| ||||| || |||||| |||||| | Sbjct 394171 GTACAAAGGGCAGGGACTTAATCAACGTGAGCTT-ATGACCTGCACTTACTGGGAATT-C 394228 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||| || | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 394229 CTCATTCACGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 394288 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||||||| ||| | | || || ||| |||||||||| | | ||| Sbjct 394289 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCACTTG-GCG 394347 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| ||| ||||||||||||||||||||||||| ||||| || Sbjct 394348 CCCCAGA-CATGTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 394391 Score = 105 bits (116), Expect = 1e-20 Identities = 144/197 (73%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 38 GACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCA 97 ||||| | || ||| |||||||| || || | | || ||||||||| | ||||||| Sbjct 393946 GACTCACACTGACTGGGAATTTC-TCATTCATGGGGAAAAATTGCAATCCCCGATCCCCA 394004 Query 98 TCACGATGAAATTTCAAAGAT-TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAA 156 |||||| ||||| | ||| || | ||||| || ||| | | || || ||| Sbjct 394005 TCACGAATGGGGTTCAACGGGCTACTCGCATCTGTCAGCGTAGGGTAGACACACGCTGAC 394064 Query 157 TACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 216 |||| ||||||||||||| |||| | |||| ||||||||||||||||||||||||| Sbjct 394065 CCAGTCAGCGTAGCGCGCGTGCAGCCCTGGACATTTAAGGGCATCACAGACCTGTTATTG 394124 Query 217 CCTCAAACTTCCGTGGC 233 ||||| || ||||| Sbjct 394125 -CTCAATCTCGGGTGGC 394140 >seq64167 Length=2207205 Score = 150 bits (166), Expect = 3e-34 Identities = 179/235 (76%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| || ||||| ||||| ||| |||||| |||||| | Sbjct 1317377 GTACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 1317320 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | |||||| ||| || ||||| | || Sbjct 1317319 CTCGTTCATGGGGAATAATTGCAATCCCCAATCCCCGTCATGAATGGGGTTCAATGGGTT 1317260 Query 120 ACCCGGACCTGTCGGCC-AAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||||| |||||||||| ||||| | | || | ||| ||||||||||| || ||| Sbjct 1317259 ACCCGCACCTGTCGGCGTAAGGT-AGACACACACTGAGCCAGTCAGTGTAGCGTGCCTGC 1317201 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| | ||||||||||||||||||||| |||||||| ||||| || ||||| Sbjct 1317200 AACCCCGGACATCTAAGGGCATCACAGACATGTTATTG-CTCAATCTCAAGTGGC 1317147 >seq86494 Length=3169539 Score = 109 bits (120), Expect = 8e-22 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| | |||| |||||||| ||||| ||| |||||| |||| | | Sbjct 2077034 GTACAAAGGGCAGGGACTAAATCAATGCGAGCTT-ATGACCCGCACTTACTGGGAA-TCC 2077091 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 ||| || | | || ||||||||| ||||| | || | ||| || | | || Sbjct 2077092 CTCCTTCATGGGGAATAATTGCAATCCCTGATCCCTACCATGAATGGGGTTCAACGGGTT 2077151 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||| ||| ||| | | || | ||| |||||||||| ||||||| Sbjct 2077152 ACCCGCACCTGTTGGCGTAGGGAAGACACATGCTGAGCCAGTCAGTGTAGCACGCGTGCA 2077211 Query 180 GCCCAGAACATCTAAGGGCATCACAGACC 208 |||| | |||||||| ||||||| || || Sbjct 2077212 GCCCCGGACATCTAACGGCATCATAGCCC 2077240 >seq92603 Length=1150611 Score = 95.1 bits (104), Expect = 2e-17 Identities = 90/114 (79%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||||||| ||| | | || || ||| | ||||| ||||||||||| Sbjct 876450 ACCCGCACCTGTCGGCACAGGGTAGACACACGCTGAGCCAAGCAGTGCAGCGCGCGTGCA 876391 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||| |||||| |||||||||||||||| ||||| ||| ||||| Sbjct 876390 GCCCCGGACATCTGAGGGCAACACAGACCTGTTATTG-CTCAATCTTGGGTGGC 876338 >seq65167 Length=3015862 Score = 86.0 bits (94), Expect = 9e-15 Identities = 156/219 (71%), Gaps = 11/219 (5%) Strand=Plus/Minus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||||||||| ||| || ||| | |||||| ||||| | | |||||| |||| |||| Sbjct 2078368 TACAAAGGGCAGAGACTTAACCAATGTGAGCTT-ATGACCCTCACTTACTGGGAA-TTCC 2078311 Query 62 TCGTTGAAGA-CCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||| || | || ||||||||| | || ||||||| | ||| ||| | | || Sbjct 2078310 TCGTACAACAGGGAATAATTGCAATCCCCGATACCCATCATGAATGGGATTCAACGGGTT 2078251 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGC-GTGC 178 |||| ||||||| | ||| | |||| | || | |||||||| | || | Sbjct 2078250 ACCCACACCTGTCAGTGTAGGCCAGAGACAAGCTG----CGCCAGTGTAGTGTGCAAAGA 2078195 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 | ||||| |||||||||| | |||||| |||||||||| Sbjct 2078194 GCCCCAG-ACATCTAAGGTCTTCACAG-GCTGTTATTGC 2078158 >seq48951 Length=15760405 Score = 86.0 bits (94), Expect = 9e-15 Identities = 81/101 (80%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| ||||||| ||||| | |||||||| |||| ||| Sbjct 9961684 GTACAAAGGGCAGGGACTTAATCAACACGAGCTT-ATGACCCACGCTTACTGGGAA-TTC 9961627 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCAC 101 ||| || | | || || |||||| | | || |||||||| Sbjct 9961626 CTCATTCATGGGGAATAACTGCAATCACCGATTCCCATCAC 9961586 Score = 82.4 bits (90), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||| | | ||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 9961573 TCAGTGTAGCACACATGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 9961515 Query 221 AAACTTCCGTGGCCTAAAAGGC-CATCTCCCTCGAA 255 || || |||| || |||| | | | |||||| || Sbjct 9961514 AATCTCGGGTGG-CTGAAAGCCACTTGTCCCTCTAA 9961480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 750979932445