Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq90049 136 7e-30 seq61613 132 9e-29 seq92269 87.8 3e-15 seq129273 82.4 1e-13 seq84495 82.4 1e-13 >seq90049 Length=1965753 Score = 136 bits (150), Expect = 7e-30 Identities = 135/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| | |||| || | ||||||||||||||||||||||||| Sbjct 1827233 ATGCTCTTAACTGAGTGTCCTGGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTT 1827292 Query 99 CAAAGCAGGC-CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 |||||||||| |||| |||||| ||| |||||||| ||||||||| | |||||| Sbjct 1827293 CAAAGCAGGCTGGTTGCCGGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCCGGTTC 1827351 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGG 209 |||||||||||||| || || | | |||||||| ||||| | |||||| Sbjct 1827352 TATTTTGTTGGTTTTCAGAACTGGAGCCATGATTAAGAGGGACGGCCGGGGG 1827403 >seq61613 Length=2114478 Score = 132 bits (146), Expect = 9e-29 Identities = 134/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| || ||| |||| | |||| ||| | ||||||||||||||||||||||||| Sbjct 459895 ATGCTGTTAACTTAGTGTCCTGGGGTGCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTT 459836 Query 99 CAAAGCAGGC-CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 |||||||||| |||| |||||| ||| |||||||| ||||||||| | |||||| Sbjct 459835 CAAAGCAGGCTGGTTGCCGGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCCGGTTC 459777 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGG 209 |||||||||||||| || || | | |||||||| ||||| | |||||| Sbjct 459776 TATTTTGTTGGTTTTCAGAACTGGAGCCATGATTAAGAGGGACGGCCGGGGG 459725 >seq92269 Length=3767949 Score = 87.8 bits (96), Expect = 3e-15 Identities = 89/112 (79%), Gaps = 3/112 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| | |||| | | | | |||||||||||||||||||||||||| Sbjct 1083579 ATGCTCTTAACTGAGTGTCCTGGGG-GTCTGAAGCTTTTACTTTGAAAAAATTAGAGTGT 1083521 Query 98 TCAAAGCAGGC-CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGAC 148 ||| ||||||| | || |||||| ||| |||||||| ||||||||| Sbjct 1083520 TCAGAGCAGGCTGGTCGCCGGAATACTCCAGCTAGGAATAATGGAATAGGAC 1083469 >seq129273 Length=342 Score = 82.4 bits (90), Expect = 1e-13 Identities = 168/243 (69%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC-TTTGCTCGAATACATTAGCATGG 132 |||||||||||||||||| |||||||| |||| ||| | || |||||| ||| || Sbjct 325 TTTACTTTGAAAAAATTACAGTGTTCAGAGCAAGCCAGTAGCCAGAATACCCCAGCTAGG 266 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||| || ||||| | | |||||||| || | | || | |||| | | || |||| Sbjct 265 GATAACGGAGCAGGAC-TTCAGTTCTATTGTGCTAGGTT-TTGGACGGGGGCCATAATTA 208 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCA---GAGGTGAAATTCTTGGATTTA 249 | | ||| | | |||| || | || ||||| |||||||||| |||||| Sbjct 207 AGGGAGATGGCCAGGGG---CAATTATCTTGTGTCAATGGAGGTGAAATGCTTGGACCAG 151 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 || || ||| | | |||| | || ||||| || |||| |||||||| |||| || Sbjct 150 CACAACACAAACCAAAGAGAAAACATTTGCCAAGAATATTTTAATTAATCA-AGAACAAA 92 Query 310 AGT 312 ||| Sbjct 91 AGT 89 >seq84495 Length=4430413 Score = 82.4 bits (90), Expect = 1e-13 Identities = 168/243 (69%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC-TTTGCTCGAATACATTAGCATGG 132 |||||||||||||||||| |||||||| |||| ||| | || |||||| ||| || Sbjct 4265399 TTTACTTTGAAAAAATTACAGTGTTCAGAGCAAGCCAGTAGCCAGAATACCCCAGCTAGG 4265458 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||| || ||||| | | |||||||| || | | || | |||| | | || |||| Sbjct 4265459 GATAACGGAGCAGGAC-TTCAGTTCTATTGTGCTAGGTT-TTGGACGGGGGCCATAATTA 4265516 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCA---GAGGTGAAATTCTTGGATTTA 249 | | ||| | | |||| || | || ||||| |||||||||| |||||| Sbjct 4265517 AGGGAGATGGCCAGGGG---CAATTATCTTGTGTCAATGGAGGTGAAATGCTTGGACCAG 4265573 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 || || ||| | | |||| | || ||||| || |||| |||||||| |||| || Sbjct 4265574 CACAACACAAACCAAAGAGAAAACATTTGCCAAGAATATTTTAATTAATCA-AGAACAAA 4265632 Query 310 AGT 312 ||| Sbjct 4265633 AGT 4265635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913918509504