Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq33326 145 3e-32 seq51173 132 2e-28 seq46854 127 9e-27 seq86716 114 5e-23 seq125916 109 2e-21 seq70054 105 3e-20 seq94488 102 3e-19 seq91714 102 3e-19 seq56505 102 3e-19 seq16664 96.9 1e-17 seq63503 91.5 6e-16 seq94156 87.8 7e-15 seq45954 86.0 3e-14 seq59503 80.6 1e-12 seq51619 80.6 1e-12 seq73387 75.2 5e-11 seq53952 75.2 5e-11 seq45620 75.2 5e-11 seq6669 75.2 5e-11 >seq33326 Length=14426246 Score = 145 bits (160), Expect = 3e-32 Identities = 113/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || || | |||||||||||||||||||||||||||| |||| |||| Sbjct 7245172 GAGCATGAGCGTACGTGCTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAG 7245113 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||||| ||| ||||||||| | ||||| | Sbjct 7245112 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATTGGTCGTCCGACC 7245053 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 7245052 TGGGTATAGGGGCGA 7245038 >seq51173 Length=13050882 Score = 132 bits (146), Expect = 2e-28 Identities = 93/106 (88%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 ||||||||||||||||||| ||||||||||||||||||||||||||||||| || || Sbjct 2262947 AGATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAG 2263006 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 2263007 CGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 2263052 >seq46854 Length=22154 Score = 127 bits (140), Expect = 9e-27 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 42 GTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATAT 101 |||| |||| ||||||||||||| | || || |||||| | | ||||| |||||||| Sbjct 7121 GTCGGGTTGCTTGGGAATGCAGCCCAAAGCTGGTGGTAAACTCCATCTAAGGCTAAATAC 7180 Query 102 TGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAG 161 |||| ||||||||||| ||||||| ||| | ||||| ||||||| |||||| | || Sbjct 7181 TGGCACGAGACCGATAGTCAACAAGTACAGTAAGGGAAAGTTGAAAAGAACTTTGAAGAG 7240 Query 162 AGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||| || || ||||||| ||| ||||| || Sbjct 7241 AGAGTTCAAGAGGGCGTGAAACCGTTAAAAGGCAA 7275 >seq86716 Length=2204247 Score = 114 bits (126), Expect = 5e-23 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||||| || | ||||||||||||||||||| |||| ||| |||| ||||||||||| Sbjct 1987327 AGCATAAGTGCTAGGACCCGAAAGATGGTGAATTATGTCTGGGCAGGGCGAAGCCAGAGG 1987268 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 || |||||||||||| | ||||| ||| |||||||||| || || || |||||| Sbjct 1987267 AAGCTCTGGTGGAGGTCCATTGCGGTCCTGATGTGCAAATCGGTCATCCAACCCGGGTAT 1987208 Query 676 AGGGGC 681 |||||| Sbjct 1987207 AGGGGC 1987202 >seq125916 Length=199037 Score = 109 bits (120), Expect = 2e-21 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92 |||| ||||||| || | ||||||||||||| | || || |||||| | | ||||| Sbjct 88312 CTTCTTCGAGTCGGGTGGCTTGGGAATGCAGCCCAAAGCTGGTGGTAAACTCCATCTAAG 88371 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 ||||| || |||| ||||||||||| |||| || | | ||||| ||||||| || Sbjct 88372 GCTAATTACTGGCACGAGACCGATAGTCAACAAATACCATAAGGGAAAGTTGAAAAGAAC 88431 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 |||| | |||||||| || || |||||||| Sbjct 88432 TTTGAAGAGAGAGTTCAAGAGGACGTGAAA 88461 >seq70054 Length=6717191 Score = 105 bits (116), Expect = 3e-20 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 772777 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGATGGTGGTAAACTCCATCTAAGGCTAAAT 772836 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| |||||| |||| ||||||| | | ||||| ||||||| |||||| | Sbjct 772837 ACTGGCACGAGACCAATAGTCAACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 772896 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 |||||||| || || |||||| ||| | ||| ||| Sbjct 772897 AGAGAGTTCAAGAGGGCGTGAAGCCGTTAAGAGGTAAG 772934 >seq94488 Length=2792697 Score = 102 bits (112), Expect = 3e-19 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 || || ||||| ||||||||||||| | || || |||||| | ||||||| ||||||| Sbjct 1468791 GAATCCAGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCTTCTAAGGCTAAAT 1468850 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| |||||| |||| ||||||| || ||||| ||||||| |||||| | Sbjct 1468851 ACTGGCATGAGACCAATAGTCAACAAGTACTGTACAGGAAAGTTGAAAAGAACTTTGAAG 1468910 Query 160 AGAGAGTTAAA 170 |||||||| || Sbjct 1468911 AGAGAGTTCAA 1468921 Score = 91.5 bits (100), Expect = 6e-16 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 |||||||||||||||||||||| || |||||||||||||| |||| ||||||| | Sbjct 1470315 AAAGATGGTGAACTATGCCTGAGCAGCATGAAGCCAGAGGAAGCTCTCGTGGAGGTCTGT 1470374 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 || || ||| ||| |||||| || || || |||| ||||||| Sbjct 1470375 AGTAGTCCTGACGTACAAATCAGTCATCCAACCTGGGCATAGGGG 1470419 >seq91714 Length=787581 Score = 102 bits (112), Expect = 3e-19 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 |||| |||||||||||||||||||||||||| || |||||| ||| ||||||||||| | Sbjct 594693 AGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGT 594634 Query 660 CGTCAAATTTGGGTATAGGGGCGA 683 |||| | ||||||||||||||| Sbjct 594633 CGTCCGACCTGGGTATAGGGGCGA 594610 >seq56505 Length=5790164 Score = 102 bits (112), Expect = 3e-19 Identities = 120/161 (75%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || | |||||| | | ||||| ||||||| Sbjct 4898665 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGCTGCTGGTAAACTCCATCTAAGGCTAAAT 4898724 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||| ||||||| || | ||||| ||||||| ||||| ||| Sbjct 4898725 ACTGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTTGAA 4898784 Query 160 -AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||| || || || | ||||| ||| | ||| || || Sbjct 4898785 GAGAGAATTCAAGAGGGCATGAAACCGTTAAGAGGTAAACG 4898825 >seq16664 Length=3367577 Score = 96.9 bits (106), Expect = 1e-17 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 |||||||| ||||||| |||| ||||||||| |||||||||||||||| || ||| | Sbjct 195653 TGGTGAACGATGCCTGGGCAGGGCGAAGCCAGAAGAAACTCTGGTGGAGGTCCGTAGCAG 195594 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| || || ||| ||||||||||| Sbjct 195593 TCCTGACGTGCAAATCGGTCATCTGGCCTGGCTATAGGGGCGA 195551 >seq63503 Length=1920607 Score = 91.5 bits (100), Expect = 6e-16 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || || |||||| | | | ||| ||||||| Sbjct 821023 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCTGGTGGTAAACTCCATTTAAGGCTAAAT 820964 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||| |||| ||||| ||||||| | | ||||| || |||| |||||| | Sbjct 820963 CCTGGCACAAGACGGATAGTCAACAAGTACCATAAGGGAAAGTTGCAAAGAACTTTGAAG 820904 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || ||||||| Sbjct 820903 AGAGAGTTCAAGAGGGCGTGAAA 820881 >seq94156 Length=1513417 Score = 87.8 bits (96), Expect = 7e-15 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| ||| | ||||||||||| | || || |||||||| | ||||| ||||| | Sbjct 100707 GAGTCAGGTTCCTGGGGAATGCAGCCCAAATCAGGTGGTAAATTCCATCTAAGGCTAATT 100766 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || | ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 100767 ACTGTCACGAGACCGATAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAACTTTGAAG 100826 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 | |||||| || | ||||||| Sbjct 100827 ATAGAGTTCAAGAAGGCGTGAAA 100849 >seq45954 Length=4722808 Score = 86.0 bits (94), Expect = 3e-14 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| ||| ||||||||||||| | || || |||||| | | ||||| |||||| Sbjct 1293534 GAGTCAGGTTTCTTGGGAATGCAGCCCAAAGCTGGTGGTAAACTCCATCTAAGACTAAAT 1293593 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 1293594 ACTGGCACGAGACCGATAGTCAACAAGTACCGTAAGAGAAAGTTGAAAAGAACTTTG--A 1293651 Query 160 AGAG 163 |||| Sbjct 1293652 AGAG 1293655 >seq59503 Length=3821454 Score = 80.6 bits (88), Expect = 1e-12 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 || ||| |||| ||||||||||| | | || || |||||| | | ||||| ||||||| Sbjct 3292498 GACTCGGGTTGCTTGGGAATGCAACCCAAAGCTGGTGGTAAACTCCATCTAAGGCTAAAT 3292439 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 | |||| |||||||||| |||||| || || ||||| ||||||| ||| Sbjct 3292438 ACTGGCACAAGACCGATAGTCAACAAGTGCCGTAATGGAAAGTTGAAAAGAACT 3292385 >seq51619 Length=2478598 Score = 80.6 bits (88), Expect = 1e-12 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||| | | || || |||||| | | ||||| ||||||| Sbjct 1666338 GAGTCGGGTTGCTTGGGAATGCAACCCAAAGCTGGTGGTAAACTCCATCTAAGGCTAAAT 1666397 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 | |||| |||||||| || ||||||| || | ||||| | ||||| | |||| Sbjct 1666398 ACTGGCACGAGACCGACAGTCAACAAGTACCGTAAGGGAAAGTTTAAAAGAATTTTG 1666454 >seq73387 Length=9726413 Score = 75.2 bits (82), Expect = 5e-11 Identities = 70/89 (79%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||||||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 6134813 GAGTTGGGTTGTTTGGGAATGCAGCCCAAAGCTGGTGGTAAACTCCATCTAAGGCTAAAT 6134872 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA 128 | |||| |||||| |||| ||||||| Sbjct 6134873 ACTGGCATGAGACCAATAGTCAACAAGTA 6134901 >seq53952 Length=3299764 Score = 75.2 bits (82), Expect = 5e-11 Identities = 70/89 (79%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 6459 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCTGGTGGTAAACTCCATCTAAGGCTAAAT 6518 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA 128 | |||| |||| |||||| ||||||| Sbjct 6519 ACTGGCACGAGAGCGATAGTCAACAAGTA 6547 >seq45620 Length=6720852 Score = 75.2 bits (82), Expect = 5e-11 Identities = 97/133 (73%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 |||| |||| |||||||||||| || || | |||||| | | ||| |||||||| Sbjct 464015 AGTCAGGTTGCCTGGGAATGCAGCA--AAGTGAGTGGTAAACACCATTTAATGCTAAATA 463958 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 ||||| ||||| | ||||| | ||||| | ||||| ||||||| | |||| | | Sbjct 463957 TTGGCATGAGACTGGTAGCGAAGAAGTACCTTACAGGAAAGTTGAAAAGTATTTTGAAGA 463898 Query 161 GAGAGTTAAAAAG 173 |||| ||||| || Sbjct 463897 GAGAATTAAAGAG 463885 >seq6669 Length=12587025 Score = 75.2 bits (82), Expect = 5e-11 Identities = 84/111 (76%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || | || |||||| | | ||||| ||||||| Sbjct 1681654 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGTTGGTGGTAAACTCCATCTAAGGCTAAAT 1681713 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAG 149 | |||| |||| ||||| ||||||| || | ||||| ||||||| Sbjct 1681714 ACTGGCACAAGACTGATAGGCAACAAGTACCCGTAAGGGAAAGTTGAAAAG 1681764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2076996506650