Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq90049 100 3e-19 seq61613 96.9 4e-18 seq92269 78.8 1e-12 >seq90049 Length=1965753 Score = 100 bits (110), Expect = 3e-19 Identities = 143/192 (74%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| ||| Sbjct 1827365 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCA 1827307 Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 ||||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 1827306 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 1827247 Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183 || | ||| |||| | ||| | || ||||| | |||||||| | || ||| |||||| Sbjct 1827246 TCAGTTAAGAGCATCAAGGGAGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGCC 1827187 Query 184 GTGAGGCGGACC 195 | | |||||| Sbjct 1827186 TCGCGACGGACC 1827175 >seq61613 Length=2114478 Score = 96.9 bits (106), Expect = 4e-18 Identities = 141/192 (73%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| ||| Sbjct 459763 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCA 459821 Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 ||||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 459822 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGCACCCCAGGACAC 459881 Query 129 CAA--TGAAGGCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183 || | | |||| | ||| | || ||||| | |||||||| | || ||| |||||| Sbjct 459882 TAAGTTAACAGCATCAAGGGAGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGCC 459941 Query 184 GTGAGGCGGACC 195 | | |||||| Sbjct 459942 TCGCGACGGACC 459953 >seq92269 Length=3767949 Score = 78.8 bits (86), Expect = 1e-12 Identities = 65/78 (83%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 33 GTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTA-AGCCTGCTTTGAACACTCTA 91 ||||||||| |||||||| ||| |||||| |||| |||||||| ||||||||||| Sbjct 1083469 GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCGACCAGCCTGCTCTGAACACTCTA 1083528 Query 92 ATTTTCTCAAGGTAAAAG 109 ||||| |||| ||||||| Sbjct 1083529 ATTTTTTCAAAGTAAAAG 1083546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594392627382