Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq97706 197 3e-48 seq51730 176 9e-42 seq53396 167 4e-39 seq84050 165 2e-38 seq64167 161 2e-37 seq80719 152 1e-34 seq86494 118 2e-24 seq48951 87.8 3e-15 seq84495 84.2 4e-14 seq65167 84.2 4e-14 seq106700 78.8 2e-12 seq105702 78.8 2e-12 seq92603 78.8 2e-12 >seq97706 Length=860129 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 50190 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 50247 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | Sbjct 50248 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGTCTAC 50307 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| |||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 50308 CCTACGCCGACAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 50367 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| |||||||||| Sbjct 50368 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT 50427 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 50428 AAGTCCCTGCCCTTTGTA 50445 >seq51730 Length=3960093 Score = 176 bits (194), Expect = 9e-42 Identities = 196/258 (76%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1291039 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 1290982 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 | ||||||| | || | |||| ||||||||||||||||||| | || || || | Sbjct 1290981 AGGCCCTTACACGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGTCTAC 1290922 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||| |||| ||||||| | | || | | | ||| || |||| | | |||| Sbjct 1290921 CCTACCCCGACAGGTGTGGGTAACCCGTTGAACCCCATTTGTGATGTGGATCGGGGATTG 1290862 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| |||||||||| Sbjct 1290861 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT 1290802 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1290801 AAGTCCCTGCCCTTTGTA 1290784 >seq53396 Length=9355083 Score = 167 bits (184), Expect = 4e-39 Identities = 161/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181 || |||||||||||||||||||| | |||| ||||||||||||||||| | | || || Sbjct 1104739 AGTTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCTGGCTCAGCG 1104680 Query 182 AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 || | ||| |||| |||| |||||| || | || | | ||||| ||||||| Sbjct 1104679 TGTGTCTACCCTACGCCGACAGGTGCGGGTAACCTGTTGAACCCCATTCGTGATGGGGAT 1104620 Query 242 AGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCAC 301 | | |||||||||||| | | | |||||||||| || |||||| ||| ||||| ||| | Sbjct 1104619 CGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTC 1104560 Query 302 GCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| |||| |||||||||||||||| Sbjct 1104559 GCGTTAATTAAGTCCCTGCCCTTTGTA 1104533 >seq84050 Length=655544 Score = 165 bits (182), Expect = 2e-38 Identities = 196/259 (76%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| ||| ||||||||||| Sbjct 100046 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAACAACAGGTCTGTA 99989 Query 131 ATGCCCTTAGATGTTCTG-GGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||||||| ||| ||| |||||| ||||||||||| || || || || | Sbjct 99988 ATGCCCTTAGATGT-CTGCGGCTGCACGCACGCTACACTGATTGACTCAGCGTGTGTCTA 99930 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| |||| |||| |||||| | | || | | ||||| ||||||| | | ||| Sbjct 99929 CCCTACGCCGACAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATT 99870 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | |||||||||| || |||||| | | |||| ||| |||||||| Sbjct 99869 GCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGTGGATCATAAGCTTGCGTTGAT 99810 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 99809 TAAGTCCCTGCCCTTTGTA 99791 >seq64167 Length=2207205 Score = 161 bits (178), Expect = 2e-37 Identities = 195/259 (75%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | || | ||||| |||||||| ||||||| Sbjct 1317121 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACTTGA-GATTGAG-CAATAACATGTCTGTG 1317178 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||| ||| || |||||||||||| | || | || | | Sbjct 1317179 ATGCCCTTAGATGTCCGGGGTTGCAGGCACGCTACACTGACTGGCTCAGTGTGTGTCT-A 1317237 Query 191 CCTTG-GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 |||| |||| |||| |||||| | | || | | || || |||||| | | ||| Sbjct 1317238 CCTTACGCCGACAGGTGCGGGTAACCCATTGAACCCCATTCATGACGGGGATTGGGGATT 1317297 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | |||||||||| || |||||| ||| ||||| ||| || ||||| Sbjct 1317298 GCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCATTGAT 1317357 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 1317358 TAAGTCCCTGCCCTTTGTA 1317376 >seq80719 Length=1996707 Score = 152 bits (168), Expect = 1e-34 Identities = 170/223 (76%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||||||||||||||||||| |||| ||||| ||| | | ||||| Sbjct 394391 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTACATGT-CTGGGGCGC-CAAGTGCTAC 394335 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| | || || || | ||| |||| |||| |||||| | | || | Sbjct 394334 ACTGACTGGCTCAGCGTGTGTCTACCCTACGCCGACAGGTGCGGGTAACCCGTTGAACCC 394275 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||| ||||||| | | |||||||||||| | | | || ||||||| || |||||| Sbjct 394274 CATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCGTGAATGAGGAATTCCCAGTAAG 394215 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||||| ||| | ||||||||| |||||||||||||||| Sbjct 394214 TGCAGGTCATAAGCTCACGTTGATTAAGTCCCTGCCCTTTGTA 394172 Score = 104 bits (114), Expect = 4e-20 Identities = 159/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 394166 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 394109 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||| |||| | |||| ||||||||||||| ||||| | | || || || | Sbjct 394108 ATGCCCTTAAATGTCCAGGGCTGCACGCGCGCTACGCTGACTGGGTCAGCGTGTGTCTAC 394049 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || | || | | ||| | | || | | ||||| ||||||| | | |||| Sbjct 394048 CCTACGCTGACAGATGCGAGTAGCCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 393989 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 ||||| || | | | || ||| ||| || ||| || | | ||| Sbjct 393988 CAATTTTTCCCCATGAATGAGAAATTCCCAGTCAGTGTGAGTC 393946 >seq86494 Length=3169539 Score = 118 bits (130), Expect = 2e-24 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 123 GGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGA 182 || || ||||||| |||||||| | |||| ||||||| ||||||||||| | || | Sbjct 2077240 GGGCTATGATGCCGTTAGATGTCCGGGGCTGCACGCGTGCTACACTGACTGGCTCAGCAT 2077181 Query 183 GT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 || || || ||| ||| |||| |||||| | | || | | || || | ||||| Sbjct 2077180 GTGTCTTC-CCTACGCCAACAGGTGCGGGTAACCCGTTGAACCCCATTCATGGTAGGGAT 2077122 Query 242 AGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCAC 301 | |||||||||||| | | | || |||| || || |||||| ||| ||||| ||| | Sbjct 2077121 CAGGGATTGCAATTATTCCCCATGAAGGAGGGATTCCCAGTAAGTGCGGGTCATAAGCTC 2077062 Query 302 GCGTTGATTACGTCCCTGCCCTTTGTA 328 || |||||| |||||||||||||||| Sbjct 2077061 GCATTGATTTAGTCCCTGCCCTTTGTA 2077035 >seq48951 Length=15760405 Score = 87.8 bits (96), Expect = 3e-15 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGT 290 ||| |||| || | |||||| ||||| | | | || ||||||| || |||||||| | Sbjct 9961586 GTGATGGGAATCGGTGATTGCAGTTATTCCCCATGAATGAGGAATTCCCAGTAAGCGTGG 9961645 Query 291 GTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||| || |||||||| |||||||||||||||| Sbjct 9961646 GTCATAAGCTCGTGTTGATTAAGTCCCTGCCCTTTGTA 9961683 Score = 86.0 bits (94), Expect = 1e-14 Identities = 82/101 (81%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | |||| |||| || | ||||| |||||||||||||||| Sbjct 9961476 CTTCTTAGAGGGACAAGTGGCTTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 9961533 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||||||||| | |||| ||| | | ||||||||||| Sbjct 9961534 ATGCCCTTAGATGTCCGGGGCTGCATGTGTGCTACACTGAC 9961574 >seq84495 Length=4430413 Score = 84.2 bits (92), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 |||||| |||||||| ||||||||||| ||| | ||| ||| |||| | ||| | | Sbjct 4266074 GCAATATCAGGTCTGGGATGCCCTTAGCTGTCCCGGGTTGCATGCGCACCACAGAGGC-T 4266132 Query 174 AGCCAACG-AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT-CTGTCG 231 |||| | | || | ||| ||| | ||||| | ||||| ||| | |||| | || Sbjct 4266133 AGCCTAGGCTGTGTCTACCCTAGGCTGAAAGGTGTAGGTAA-CTTACTGAACTGCGTTCA 4266191 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 | ||||||| | | |||||||||||| | | | || |||| || || ||| | || Sbjct 4266192 CGATGGGGATTGGGGATTGCAATTATTCCCCATGAATGAGGCATTTCTGGTAGGTGCAGA 4266251 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| ||| |||||||||||| | ||||| Sbjct 4266252 TCATAAGCTAGCG----TTACGTCCCTGCTCGTTGTA 4266284 >seq65167 Length=3015862 Score = 84.2 bits (92), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCAC-GCGCGCTACACTGACA 172 |||||||||| |||||| | |||||||||| ||||| | | || | |||||||| | Sbjct 2078158 GCAATAACAGC-CTGTGAAGACCTTAGATGT-CTGGGGCTCTTTGCACACTACACTGGCG 2078215 Query 173 GAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGT 232 ||| || | ||| | | |||| ||||||| | | || | | || | Sbjct 2078216 CAGCTT----GTCTCTGGCCTACACTGACAGGTGTGGGTAACCCGTTGAATCCCATTCAT 2078271 Query 233 GCTGGGGATAGAGCATTGCAATTATTGC-TCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 | |||| || | | |||||||||||| | | || ||||||||| || |||||| | | | Sbjct 2078272 GATGGGTATCGGGGATTGCAATTATTCCCTGTTGTACGAGGAATTCCCAGTAAGTGAGGG 2078331 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| | | ||| ||| ||| |||||||||||| Sbjct 2078332 TCATAAGCTCACATTGGTTAAGTCTCTGCCCTTTGTA 2078368 >seq106700 Length=14062341 Score = 78.8 bits (86), Expect = 2e-12 Identities = 148/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||| | ||| ||||| | |||||| |||| | Sbjct 6626828 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCAAGGCTGCACGTGGGCTACATTGACTG 6626887 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 || | || | ||| || |||| | ||| | | | ||| | | ||| Sbjct 6626888 GCGCAGTGTGTGTCTACCCTACTCCAACAGGTGCAGATAA-CCCGCTGAAC-CATTTGTG 6626945 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 | |||| | | ||||| |||||| | | || ||||||| | ||||| || || Sbjct 6626946 AAGTGGATTGGGGATTGCCATTATTCCCCAGGAATGAGGAATTCACAGTAAATGCAGATC 6627005 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| | | || ||| |||||||| ||||||| Sbjct 6627006 ATAAGCTCACATTAGTTAAGTCCCTGCTCTTTGTA 6627040 >seq105702 Length=1195636 Score = 78.8 bits (86), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 |||||| |||||||| ||||||||||| ||| | || ||| |||| | ||| | | Sbjct 1068746 GCAATATCAGGTCTGGGATGCCCTTAGCTGTCCCAGGTTGCATGCGCACCACAGAGGC-T 1068804 Query 174 AGCCAACG-AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT-CTGTCG 231 |||| | | || | ||| ||| | ||||| | ||||| ||| | |||| | || Sbjct 1068805 AGCCTAGGCTGTGTCTACCCTAGGCTGAAAGGTGTAGGTAA-CTTACTGAACTGCGTTCA 1068863 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 | ||||||| | | |||||||||||| | | | || |||| || ||| ||| | || Sbjct 1068864 CGATGGGGATTGGGGATTGCAATTATTCCCCATGAATGAGGCATTCCTGGTAGGTGCAGA 1068923 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| | | |||||||||||| | ||||| Sbjct 1068924 TCATAAGCTAGTG----TTACGTCCCTGCTCGTTGTA 1068956 >seq92603 Length=1150611 Score = 78.8 bits (86), Expect = 2e-12 Identities = 57/65 (88%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 ||| ||||| |||||||||||||||| |||||| |||||| | |||| ||||||||||| Sbjct 876345 AAGATTGAG-CAATAACAGGTCTGTGTTGCCCTCAGATGTCCGGGGCTGCACGCGCGCTG 876403 Query 165 CACTG 169 ||||| Sbjct 876404 CACTG 876408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945873702144