Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18]
140,023 sequences; 2,208,410,377 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq78831 95.1 1e-14
seq94266 93.3 3e-14
seq54353 93.3 3e-14
seq10001 82.4 6e-11
>seq78831
Length=713705
Score = 95.1 bits (104), Expect = 1e-14
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| ||||| |||||| | | ||||| || |||||||| || || ||||
Sbjct 191108 TGGAGCGATTCAGCCAGGAAGTGCAAATCCCAGAGGCTCGCTGTTTCTATGGATTTCAGA 191167
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
|| || |||||||| |||||||||||||||||| | || || || || |||||||
Sbjct 191168 TTCTAATTGAGAATGTTCACTCGGAGATGTACAGTTTGCTAATAGACACATACATCA 191224
>seq94266
Length=584714
Score = 93.3 bits (102), Expect = 3e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| || |||||||| ||||||||||| ||||||| || | ||||| |||||||| |
Sbjct 89257 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGCTCCTCCTT 89316
Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459
||| || || || ||| || |||||||| ||||| |||||||| ||||| ||
Sbjct 89317 CCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCATGGCTCCAGATA 89376
Query 66460 GATGGCGAA 66468
|||||| ||
Sbjct 89377 GATGGCAAA 89385
>seq54353
Length=924
Score = 93.3 bits (102), Expect = 3e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| || |||||||| ||||||||||| ||||||| || | ||||| |||||||| |
Sbjct 637 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGCTCCTCCTT 696
Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459
||| || || || ||| || |||||||| ||||| |||||||| ||||| ||
Sbjct 697 CCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCATGGCTCCAGATA 756
Query 66460 GATGGCGAA 66468
|||||| ||
Sbjct 757 GATGGCAAA 765
>seq10001
Length=4979691
Score = 82.4 bits (90), Expect = 6e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| || || || || || | || || || |||||||| ||||||||||
Sbjct 1099900 TGGAGCGATTCAGCCAAGAAGTACAGGTAACAGAAGCTCGCTGTTTCTATGGCTTCCAGA 1099841
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370
|||| ||||| || | || || || ||||||||| | ||||| ||||| |||||
Sbjct 1099840 TTGCTATGGAAAACATACATTCAGAAATGTACAGTCTGCTCATAGATACTTACAT 1099786
Score = 82.4 bits (90), Expect = 6e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084
|||| ||||| | | || ||||| | || || || ||||||||||| |||| | |
Sbjct 1101699 ATGAGCCCCTCCTACGGGAAAATCCCCACCGGTTTGTCATGTTCCCCATCCAGTACCATG 1101640
Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139
|||| |||| |||||||| || || || |||||||||||||| || || |||||
Sbjct 1101639 ATATCTGGCAGATGTACAAGAAAGCAGAGGCTTCCTTCTGGACAGTTGAAGAGGT 1101585
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396889538156720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |