Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq78831 95.1 1e-14 seq94266 93.3 3e-14 seq54353 93.3 3e-14 seq10001 82.4 6e-11 >seq78831 Length=713705 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||||| |||||| | | ||||| || |||||||| || || |||| Sbjct 191108 TGGAGCGATTCAGCCAGGAAGTGCAAATCCCAGAGGCTCGCTGTTTCTATGGATTTCAGA 191167 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || || |||||||| |||||||||||||||||| | || || || || ||||||| Sbjct 191168 TTCTAATTGAGAATGTTCACTCGGAGATGTACAGTTTGCTAATAGACACATACATCA 191224 >seq94266 Length=584714 Score = 93.3 bits (102), Expect = 3e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| ||||||| || | ||||| |||||||| | Sbjct 89257 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGCTCCTCCTT 89316 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||| || || || ||| || |||||||| ||||| |||||||| ||||| || Sbjct 89317 CCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCATGGCTCCAGATA 89376 Query 66460 GATGGCGAA 66468 |||||| || Sbjct 89377 GATGGCAAA 89385 >seq54353 Length=924 Score = 93.3 bits (102), Expect = 3e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| ||||||| || | ||||| |||||||| | Sbjct 637 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGCTCCTCCTT 696 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||| || || || ||| || |||||||| ||||| |||||||| ||||| || Sbjct 697 CCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCATGGCTCCAGATA 756 Query 66460 GATGGCGAA 66468 |||||| || Sbjct 757 GATGGCAAA 765 >seq10001 Length=4979691 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || || || | || || || |||||||| |||||||||| Sbjct 1099900 TGGAGCGATTCAGCCAAGAAGTACAGGTAACAGAAGCTCGCTGTTTCTATGGCTTCCAGA 1099841 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||| ||||| || | || || || ||||||||| | ||||| ||||| ||||| Sbjct 1099840 TTGCTATGGAAAACATACATTCAGAAATGTACAGTCTGCTCATAGATACTTACAT 1099786 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| ||||| | | || ||||| | || || || ||||||||||| |||| | | Sbjct 1101699 ATGAGCCCCTCCTACGGGAAAATCCCCACCGGTTTGTCATGTTCCCCATCCAGTACCATG 1101640 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 |||| |||| |||||||| || || || |||||||||||||| || || ||||| Sbjct 1101639 ATATCTGGCAGATGTACAAGAAAGCAGAGGCTTCCTTCTGGACAGTTGAAGAGGT 1101585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396889538156720