Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq78564 185 1e-44 seq36 140 5e-31 seq45255 122 1e-25 seq113 120 5e-25 seq1123 116 6e-24 seq60394 113 7e-23 seq78593 102 1e-19 seq78544 100 4e-19 seq78583 98.7 1e-18 seq55715 96.9 5e-18 seq70704 95.1 2e-17 seq75729 93.3 6e-17 seq78576 91.5 2e-16 seq71519 89.7 8e-16 seq57407 89.7 8e-16 seq1498 82.4 1e-13 seq78581 80.6 4e-13 seq78568 80.6 4e-13 seq68451 80.6 4e-13 >seq78564 Length=8270741 Score = 185 bits (204), Expect = 1e-44 Identities = 186/235 (79%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||| | Sbjct 5768350 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 5768407 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCC-ATCACGATGAAATTTCAAAGA-T 118 |||||| | | || ||||||||| | |||||| ||||||| ||||| | | Sbjct 5768408 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCTATCACGAATGGGGTTCAACGGGT 5768467 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||||| |||||||||| ||| | | || || ||| |||||||||||||||||| Sbjct 5768468 TACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCGCGTGC 5768527 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 5768528 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 5768581 >seq36 Length=8391780 Score = 140 bits (154), Expect = 5e-31 Identities = 170/226 (75%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||||||||| ||||| ||| |||||| |||||| | Sbjct 4584726 GTACAAAGGGCAGGGACATA----ACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 4584779 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAG-ATT 119 || ||| | | || | ||||||| | |||||||||| || ||||| | ||| Sbjct 4584780 CTTGTTCATGGGGAATAGTTGCAATCCCCGATCCCCATCATGAATGGGGTTCAACGGATT 4584839 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||||||| ||| | | || || ||| |||| |||| || |||| Sbjct 4584840 ACCCACACCTGTCGGAGTAGGGTAGACACACGCTGAGCCAGTCAGAGTAGAGCAAGTGCA 4584899 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||| | |||||||||||||||||||||||||||||| ||||| || Sbjct 4584900 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 4584944 >seq45255 Length=691 Score = 122 bits (134), Expect = 1e-25 Identities = 125/161 (78%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 74 AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTC 132 || ||||||||| | ||||||||||||| ||||| | ||||||| ||||||| Sbjct 11 AATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCACCTGTC 70 Query 133 GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCT 192 ||| ||| | | || || ||| |||||||||||||||||| |||| | |||||| Sbjct 71 GGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCT 130 Query 193 AAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||||||||||||||||||||||| ||||| || ||||| Sbjct 131 AAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 170 >seq113 Length=3570770 Score = 120 bits (132), Expect = 5e-25 Identities = 124/161 (77%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA 117 ||||||||| | | || ||||||||| | ||||||||||||| ||||| | Sbjct 1250583 TTCCTCGTTCATGGGGAATAATTGCAATCCCCAATCCCCATCACGAATGGGGTTCAACGG 1250524 Query 118 -TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||||||| |||||||||| ||| | | || || ||| |||||||||||| ||| Sbjct 1250523 GTTACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCACGT 1250464 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 || |||| | ||||||||||||||||||||||||||||||| Sbjct 1250463 GCAGCCCGGGACATCTAAGGGCATCACAGACCTGTTATTGC 1250423 >seq1123 Length=66662 Score = 116 bits (128), Expect = 6e-24 Identities = 124/161 (77%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 74 AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTC 132 || ||||||||| | ||||||||||||| ||||| | ||||||| ||||||| Sbjct 43206 AATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCACCTGTC 43147 Query 133 GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCT 192 ||| || | | || || ||| |||||||||||||||||| |||| | |||||| Sbjct 43146 GGCGTGGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCT 43087 Query 193 AAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||||||||||||||||||||||| ||||| || ||||| Sbjct 43086 AAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 43047 >seq60394 Length=566 Score = 113 bits (124), Expect = 7e-23 Identities = 109/136 (80%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||| ||| Sbjct 134 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 77 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| | | || ||||||||| | |||||||||||| ||| || | | || Sbjct 76 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 17 Query 120 ACCCGGACCTGTCGGC 135 ||||| |||||||||| Sbjct 16 ACCCGCACCTGTCGGC 1 >seq78593 Length=15526681 Score = 102 bits (112), Expect = 1e-19 Identities = 106/135 (79%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||| ||||| || ||||||||||||| ||||| ||| |||||| |||| ||| Sbjct 3149308 GTACAAAGGGCTGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 3149251 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| | | || ||||||||| | |||||||||||| ||| || | | || Sbjct 3149250 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 3149191 Query 120 ACCCGGACCTGTCGG 134 ||||| |||||| || Sbjct 3149190 ACCCGCACCTGTTGG 3149176 >seq78544 Length=15366631 Score = 100 bits (110), Expect = 4e-19 Identities = 106/136 (78%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||||||||||||| | |||||| |||||| ||||| ||| |||||| |||| ||| Sbjct 8784756 GTATAAAGGGCAGGGACTCAATCAACGTGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 8784699 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| | | || ||||||||| | ||||||||||| ||| | || | | || Sbjct 8784698 CTCGTTCATGGGGAATAATTGCAATCCCCAGTCCCCATCACGAATGGAGTTCAATGGGTT 8784639 Query 120 ACCCGGACCTGTCGGC 135 ||||| |||||||||| Sbjct 8784638 ACCCGCACCTGTCGGC 8784623 >seq78583 Length=22294289 Score = 98.7 bits (108), Expect = 1e-18 Identities = 103/134 (77%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 74 AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTC 132 || ||||||||| | ||||||||||||| ||||| | ||||||| ||||||| Sbjct 13406407 AATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCACCTGTC 13406348 Query 133 GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCT 192 ||| ||| | | || || ||| |||||||||||||||||| |||| | |||||| Sbjct 13406347 GGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCT 13406288 Query 193 AAGGGCATCACAGA 206 |||||||||||||| Sbjct 13406287 AAGGGCATCACAGA 13406274 >seq55715 Length=623 Score = 96.9 bits (106), Expect = 5e-18 Identities = 86/104 (83%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||| ||| Sbjct 515 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 572 Query 61 CTCGTTGAAGACCAACAATTGCAAT-GATCTATCCCCATCACGA 103 |||||| | | || ||||||||| | ||||||||||||| Sbjct 573 CTCGTTCATGGGGAATAATTGCAATCCCCCGATCCCCATCACGA 616 >seq70704 Length=503 Score = 95.1 bits (104), Expect = 2e-17 Identities = 82/99 (83%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||| ||| Sbjct 132 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 189 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATC 99 |||||| | | || ||||||||| | ||||||||| Sbjct 190 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATC 228 >seq75729 Length=509 Score = 93.3 bits (102), Expect = 6e-17 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 323 TCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 265 Query 221 AAACTTCCGTGGC 233 || || ||||| Sbjct 264 AATATTGGGTGGC 252 >seq78576 Length=21394870 Score = 91.5 bits (100), Expect = 2e-16 Identities = 58/62 (94%), Gaps = 1/62 (2%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 14682316 TCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 14682374 Query 221 AA 222 || Sbjct 14682375 AA 14682376 >seq71519 Length=530 Score = 89.7 bits (98), Expect = 8e-16 Identities = 63/71 (89%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 163 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 297 AGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 239 Query 223 ACTTCCGTGGC 233 || ||||| Sbjct 238 TCTCGGGTGGC 228 >seq57407 Length=556 Score = 89.7 bits (98), Expect = 8e-16 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 123 CGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCC 182 || |||||||||| ||| | | || || ||| |||||||||||||||||| ||| Sbjct 556 CGCACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCC 497 Query 183 CAGAACATCTAAGGGCATCACAGACCTGTTAT 214 | | |||||||||||||||||||||||||||| Sbjct 496 CCGGACATCTAAGGGCATCACAGACCTGTTAT 465 >seq1498 Length=41128 Score = 82.4 bits (90), Expect = 1e-13 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 167 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 |||||||||||| |||| | |||||||||||||||||||||||||||||| ||||| || Sbjct 2662 TAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTC 2604 Query 227 CCGTGGC 233 ||||| Sbjct 2603 GGGTGGC 2597 >seq78581 Length=17267600 Score = 80.6 bits (88), Expect = 4e-13 Identities = 80/101 (79%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| | ||||||| ||||| ||||| ||| ||||| |||| ||| Sbjct 1909375 GTACAAAGGGCAGGGACTAAATCAACGCTAGCTT-ATGACCCGCATTTACTGGGAA-TTC 1909318 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCAC 101 ||| || | | || ||||||||| | ||||||||||| Sbjct 1909317 CTCATTCATGGGGAATAATTGCAATCCCCGATCCCCATCAC 1909277 >seq78568 Length=17655681 Score = 80.6 bits (88), Expect = 4e-13 Identities = 59/66 (89%), Gaps = 2/66 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||| ||| Sbjct 9868203 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 9868260 Query 61 CTCGTT 66 |||||| Sbjct 9868261 CTCGTT 9868266 >seq68451 Length=516 Score = 80.6 bits (88), Expect = 4e-13 Identities = 59/66 (89%), Gaps = 2/66 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||| ||| Sbjct 453 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 510 Query 61 CTCGTT 66 |||||| Sbjct 511 CTCGTT 516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751427435425