Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq77426 116 2e-24 seq36412 116 2e-24 seq8 116 2e-24 seq69174 111 9e-23 seq73732 107 1e-21 seq12 107 1e-21 seq1 95.1 7e-18 seq45690 93.3 2e-17 seq55209 78.8 5e-13 >seq77426 Length=502 Score = 116 bits (128), Expect = 2e-24 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| |||||| |||| ||| |||| ||||| |||| Sbjct 36 GAACCCAAAGACTTTGGTTTCCCGTAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 95 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 96 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 152 >seq36412 Length=839 Score = 116 bits (128), Expect = 2e-24 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| |||||| |||| ||| |||| ||||| |||| Sbjct 353 GAACCCAAAGACTTTGGTTTCCCGTAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 412 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 413 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 469 >seq8 Length=51558079 Score = 116 bits (128), Expect = 2e-24 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| |||||| |||| ||| |||| ||||| |||| Sbjct 45483101 GAACCCAAAGACTTTGGTTTCCCGTAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 45483160 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 45483161 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 45483217 Score = 116 bits (128), Expect = 2e-24 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| |||||| |||| ||| |||| ||||| |||| Sbjct 45484148 GAACCCAAAGACTTTGGTTTCCCGTAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 45484089 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 45484088 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 45484032 >seq69174 Length=539 Score = 111 bits (122), Expect = 9e-23 Identities = 96/118 (81%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| |||||| |||| ||| |||| ||||| |||| Sbjct 32 GAACCCAAAGACTTTGGTTTCCCGTAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 91 Query 61 GATCCCTAGTCGG-CATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||||||| ||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 92 GATCGCTAGTCGGACATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 149 >seq73732 Length=517 Score = 107 bits (118), Expect = 1e-21 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCC-AAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 |||||| |||||||||| |||| |||||| |||| ||| |||| ||||| |||| Sbjct 487 GAACCCTAAAGACTTTGGTTTCCCGTAAGCTGCCCGGCGGGTCATGGGAATAACG-CGCC 429 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 428 GGATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 371 >seq12 Length=19094261 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||| |||||| |||| |||| |||| |||||| | || Sbjct 5187087 GAACCCAAAGACTTTGATTTCCCGTAAGCTGCCCAGCGGGTCATGGGAATAACACCACCG 5187028 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| |||| ||| |||| ||| ||||||||||||||| || Sbjct 5187027 GATCGCTAGTCGGCATCATTTATGGTCGGAACTATGACAGTATCTGATCGTCTTTGA 5186971 >seq1 Length=77392008 Score = 95.1 bits (104), Expect = 7e-18 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| ||||| |||| | | |||| ||||| ||| Sbjct 37640627 GAACCCAAAGACTTTGGTTTCATGTAAGCTGCCTGGTGGGTCACGGGAATAACGCTGCCG 37640686 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||| ||||||| ||||| ||| | |||| ||||||||||||||||||| || Sbjct 37640687 GATCACTAATCGGCATTGTTTATGGTCAGAACTATGACGGTATCTGATCGTCTTTGA 37640743 >seq45690 Length=4438 Score = 93.3 bits (102), Expect = 2e-17 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 24 GTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATAGTTTAC 83 ||||| |||| |||||||| |||||| |||| |||| ||||||||||| ||||| Sbjct 4289 GTAAGCTGCCCGGCGAGTCATGGGAATAACACCGCCGGATCGCTAGTCGGCATCGTTTAT 4348 Query 84 GGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| ||||||||||||||||||||||||||| Sbjct 4349 GGTCGGAACTACGACGGTATCTGATCGTCTTCGA 4382 >seq55209 Length=603 Score = 78.8 bits (86), Expect = 5e-13 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| |||||| |||| ||| |||| ||||| |||| Sbjct 321 GAACCCAAAGACTTTGGTTTCCCGTAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 380 Query 61 GATCCCTAGTCGGCATAGTTTACGGT 86 |||| ||||||||||| ||||| ||| Sbjct 381 GATCGCTAGTCGGCATCGTTTATGGT 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278194867050