Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq77426 179 7e-43 seq73732 179 7e-43 seq36412 168 1e-39 seq69174 158 2e-36 seq1 158 2e-36 seq12 152 9e-35 seq6542 127 4e-27 seq451 84.2 4e-14 seq51489 78.8 2e-12 seq211 73.4 7e-11 >seq77426 Length=502 Score = 179 bits (198), Expect = 7e-43 Identities = 207/275 (75%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| | |||| || | ||||||||||||||||||||||||| Sbjct 432 ATGCTCTTAACTGAGTGTCCTGGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTT 373 Query 99 CAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 |||||||||| | || |||||| ||| |||||||| ||||||||| | |||||| Sbjct 372 CAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCCGGTTC 314 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 |||||||||||||| | || | | |||||||| ||||| | |||||| | ||| Sbjct 313 TATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTA 254 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 || | |||||||||||||||||| ||||| || | |||||||| || Sbjct 253 TTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAAAGCGAAAGCATTT 194 Query 278 ACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| |||||||||||||||| |||||||||| Sbjct 193 GCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 160 >seq73732 Length=517 Score = 179 bits (198), Expect = 7e-43 Identities = 207/275 (75%), Gaps = 3/275 (1%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| | |||| || | ||||||||||||||||||||||||| Sbjct 92 ATGCTCTTAACTGAGTGTCCTGGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTT 151 Query 99 CAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 |||||||||| | || |||||| ||| |||||||| ||||||||| | |||||| Sbjct 152 CAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCCGGTTC 210 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 |||||||||||||| | || | | |||||||| ||||| | |||||| | ||| Sbjct 211 TATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTA 270 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 || | |||||||||||||||||| ||||| || | |||||||| || Sbjct 271 TTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAAAGCGAAAGCATTT 330 Query 278 ACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| |||||||||||||||| |||||||||| Sbjct 331 GCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 364 >seq36412 Length=839 Score = 168 bits (186), Expect = 1e-39 Identities = 206/276 (75%), Gaps = 4/276 (1%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| | |||| || | ||||||||||||||||||||||||| Sbjct 750 ATGCTCTTAACTGAGTGTCCTGGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTT 691 Query 99 CAAAGCAGGC-CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 |||||||||| | || | |||| ||| |||||||| ||||||||| | |||||| Sbjct 690 CAAAGCAGGCTGGTCGCCGGGATACTCCAGCTAGGAATAATGGAATAGGAC-TCCGGTTC 632 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 |||||||||||||| | || | | |||||||| ||||| | |||||| | ||| Sbjct 631 TATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTA 572 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 || | |||||||||||||||||| ||||| || | |||||||| || Sbjct 571 TTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAAAGCGAAAGCATTT 512 Query 278 ACCAAG-GATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| |||||||||||||||| |||||||||| Sbjct 511 GCCAAGTAATGTTTTCATTAATCA-AGAACGAAAGT 477 >seq69174 Length=539 Score = 158 bits (174), Expect = 2e-36 Identities = 208/279 (75%), Gaps = 7/279 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTG-AAAAAATTAGAGTGT 97 |||| ||| |||| |||| | |||| || | ||||||||| ||||||||||||||| Sbjct 433 ATGCTCTTAACTGAGTGTCCTGGGGGTCCGAAGCGTTTACTTTGTAAAAAATTAGAGTGT 374 Query 98 TCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 ||||||||||| | || |||||| ||| |||||||| ||||||||| | ||||| Sbjct 373 TCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCCGGTT 315 Query 157 CTA-TTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTG-TC 213 ||| ||||||||| || | ||| | | | |||||||| ||||| | |||||| | Sbjct 314 CTAGTTTTGTTGGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGGCATT 255 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 254 CGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAAAGCGAAAGC 195 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 194 ATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 157 >seq1 Length=77392008 Score = 158 bits (174), Expect = 2e-36 Identities = 206/277 (74%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| | |||| || | | | |||||||||||||||||||||||| Sbjct 37641022 ATGCTCTTAACTGAGTGTCCTGGGGGTCC-GAAGTGTTTACTTTGAAAAAATTAGAGTGT 37640964 Query 98 TCAAAGCAGGC-CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 ||||||||||| | || |||||| ||| |||||||| ||||| || | ||||| Sbjct 37640963 TCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGGAATAATGGAATA-GAGCTCCGGTT 37640905 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||||| | || | |||||||| ||||| | |||||| | || Sbjct 37640904 CTATTTTGTTGGTTTTCGGAACTGAGACCATGATTAAGAGGGACGGCCGGGGGCATTCGT 37640845 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| || |||||||||||| |||||| |||||| || | | |||||| || Sbjct 37640844 ATTGTGCTGCCAGAGGTGAAATCCTTGGA-CCGGCGAAGACAGACCAAAGTGAAAGCATT 37640786 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||||| |||||||||||||||| || ||||||| Sbjct 37640785 TGCCAAGAATGTTTTCATTAATCA-AAAATGAAAGTT 37640750 >seq12 Length=19094261 Score = 152 bits (168), Expect = 9e-35 Identities = 201/275 (73%), Gaps = 3/275 (1%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| | |||| || | ||| |||||||||||| |||||||| Sbjct 5186691 ATGCTCTTAACTGAGTGTCCTGGGGGTCCGAAGCATTTCCTTTGAAAAAATGAGAGTGTT 5186750 Query 99 CAAAGCAGGCCT-TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 |||||||||| || || |||||| ||| |||||||| ||||||||| | |||||| Sbjct 5186751 CAAAGCAGGCTGGTTACTGGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCCGGTTC 5186809 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 |||||||||||||| | || | | |||||||| ||| || || ||||| | ||| Sbjct 5186810 TATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGAATGGTTGGGGGCATTCGTA 5186869 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 || | ||| |||||||||| ||| | ||||| || | | |||||| || Sbjct 5186870 TTGTGCCGCTAGAAGTGAAATTCTGGGACTGGCGCAAGACGGACCAAAGAGAAAGCATTT 5186929 Query 278 ACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| ||||||||||||| | ||| |||||| Sbjct 5186930 GCCAAGAATGTTTTCATTAA-CGAAGAAAGAAAGT 5186963 >seq6542 Length=1031 Score = 127 bits (140), Expect = 4e-27 Identities = 176/240 (73%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||||||||| ||||||||||| ||| | || || |||||| |||| | |||||| Sbjct 254 TTTACTTTGAATAAATTAGAGTGCTCAGAACAAGCGTTTGCTTGAATGGTCGATCATGGA 195 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||||| || ||||| | |||||||| ||| |||| ||| | || | ||||| |||| Sbjct 194 ATAATAAAAGAGGAC-TTCGGTTCTA-TTTATTGG-TTCAGGAACTGAAATAATGGTTAA 138 Query 194 TAGGGA-TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 ||||| | ||||||| | |||| | | ||||||||||||| |||| | Sbjct 137 GAGGGACAATTCGGGGGCATTCGTATCCCTGCGCGAGAGGTGAAATTCGTGGACCGCAGG 78 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||| ||| |||||||| || ||||| |||| ||||||||||| |||||||||| Sbjct 77 GGGACGCCCTAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAAGT 19 >seq451 Length=322061 Score = 84.2 bits (92), Expect = 4e-14 Identities = 102/135 (76%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-CTTTGCTCGAATACATTAGCATGG 132 ||| |||||||||||||| |||||||||||||||| ||| ||||| ||| ||| Sbjct 39559 TTTTCTTTGAAAAAATTAAAGTGTTCAAAGCAGGCTGGTTGACGAAATACTCCAGCTTGG 39500 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCT-AGGACCGCCGTAATGATT 191 ||||| |||||||| | ||||| |||| ||||| ||| | || | | |||||| Sbjct 39499 AATAAAGAAATAGGAC-TCCGGTTTTATTCTGTTGTTTTTTCCAAACTGGGGCCATGATT 39441 Query 192 AATAGGGATAGTCGG 206 || ||||| |||||| Sbjct 39440 AAGAGGGACAGTCGG 39426 >seq51489 Length=661 Score = 78.8 bits (86), Expect = 2e-12 Identities = 83/107 (78%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA--CTTTTACTTTGAAAAAATTAGAGTG 96 |||| ||| |||| |||| | |||| | | || | ||||||||||||||||||||||| Sbjct 107 ATGCTCTTAACTGAGTGTCCTGGGGGGTCCCGAAGCGTTTACTTTGAAAAAATTAGAGTG 48 Query 97 TTCAAAGCAGGC-CTTTGCTCGAATACATTAGCATGGAATAATAGAA 142 |||||||||||| | || |||||| ||| |||||||| ||| Sbjct 47 TTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGGAATAATGGAA 1 >seq211 Length=1890601 Score = 73.4 bits (80), Expect = 7e-11 Identities = 75/94 (80%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 117 GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGG 176 |||||| ||| |||||||| || |||||| | |||||||||||||||||||| | || Sbjct 260722 GAATACTCCAGCTAGGAATAATGGACTAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGG 260779 Query 177 ACC-GCCGTAATGATTAATAGGGATAGTCGGGGG 209 ||| | | |||||||| |||||| | |||||| Sbjct 260780 ACCTGGGGCCATGATTAAGAGGGATGGCCGGGGG 260813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914480698560