Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq73732 109 7e-22 seq77426 107 2e-21 seq36412 105 8e-21 seq1 100 3e-19 seq69174 91.5 2e-16 seq51489 82.4 9e-14 seq12 77.0 4e-12 >seq73732 Length=517 Score = 109 bits (120), Expect = 7e-22 Identities = 145/192 (76%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 224 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCG 166 Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 ||||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 165 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 106 Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183 || | ||| |||| | ||| | || ||||| | |||||||| | || ||| |||||| Sbjct 105 TCAGTTAAGAGCATCAAGGGAGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGCC 46 Query 184 GTGAGGCGGACC 195 | |||||||| Sbjct 45 TCGCGGCGGACC 34 >seq77426 Length=502 Score = 107 bits (118), Expect = 2e-21 Identities = 146/193 (76%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 300 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCG 358 Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 ||||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 359 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 418 Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTA-ATGCAGTA-CTCGC 182 || | ||| |||| | ||| | || ||||| | |||||||| | | || ||| ||||| Sbjct 419 TCAGTTAAGAGCATCAAGGGAGCGCCGAGAGGCAGGGGCTGGGGACAGGCGGTAGCTCGC 478 Query 183 CGTGAGGCGGACC 195 | | |||||||| Sbjct 479 CTCGCGGCGGACC 491 >seq36412 Length=839 Score = 105 bits (116), Expect = 8e-21 Identities = 144/192 (75%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||| | |||| Sbjct 618 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATCCCGGCG 676 Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 ||||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 677 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 736 Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183 || | ||| |||| | ||| | || ||||| | |||||||| | || ||| |||||| Sbjct 737 TCAGTTAAGAGCATCAAGGGAGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGCC 796 Query 184 GTGAGGCGGACC 195 | |||||||| Sbjct 797 TCGCGGCGGACC 808 >seq1 Length=77392008 Score = 100 bits (110), Expect = 3e-19 Identities = 145/193 (75%), Gaps = 9/193 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | || ||||| |||||||| ||| |||||| |||| Sbjct 37640890 AAACCAACAAAATAGAACCGGAGCTC-TATTCCATTATTCCTAGCTGGAGTATTCCGGCG 37640948 Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA-AGTCCTGGTTCCTCCGCACA 127 ||||||||||||||||||||||||| |||| ||||| | | | || || | | ||| Sbjct 37640949 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACACTTC-GGACCCCCAGGACA 37641007 Query 128 C-CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGC 182 | || | ||| |||| | ||| | || ||||| | |||||||| | || ||| ||||| Sbjct 37641008 CTCAGTTAAGAGCATCAAGGGAGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGC 37641067 Query 183 CGTGAGGCGGACC 195 | | |||||||| Sbjct 37641068 CTCGCGGCGGACC 37641080 >seq69174 Length=539 Score = 91.5 bits (100), Expect = 2e-16 Identities = 144/195 (74%), Gaps = 10/195 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAA-TAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGC 68 || ||||||||| ||| || | ||||||||| |||||||| ||| |||||| ||| Sbjct 299 AACCCAACAAAACTAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGC 357 Query 69 GTA-AGCCTGCTTTGAACACTCTAATTTTCT-CAAGGTAAAAGTCCTGGTTCCTCCGCAC 126 | ||||||||||||||||||||||||| | ||| ||||| | || || | | || Sbjct 358 GACCAGCCTGCTTTGAACACTCTAATTTTTTACAAAGTAAACGCTTCGGACCCCCAGGAC 417 Query 127 AC-CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTAGGG--CTGGGTAATGCAGTA-CTC 180 || || | ||| |||| | ||| | || ||||| |||| ||||| | || ||| ||| Sbjct 418 ACTCAGTTAAGAGCATCAAGGGAGCGCCGAGAGGCAGGGGTCTGGGACAGGCGGTAGCTC 477 Query 181 GCCGTGAGGCGGACC 195 ||| | |||||||| Sbjct 478 GCCTCGCGGCGGACC 492 >seq51489 Length=661 Score = 82.4 bits (90), Expect = 9e-14 Identities = 124/166 (75%), Gaps = 9/166 (5%) Strand=Plus/Plus Query 39 TTCTATTATTCCATGCTAATGTATTCGGGCGTA-AGCCTGCTTTGAACACTCTAATTTTC 97 ||| |||||||| ||| |||||| |||| ||||||||||||||||||||||||| Sbjct 1 TTCCATTATTCCTAGCTGGAGTATTCCGGCGACCAGCCTGCTTTGAACACTCTAATTTTT 60 Query 98 TCAAGGTAAAAG-TCCTGGTTCCTCC-GCACAC-CAATGAAG-GCAT-ACGGGCTCACCA 152 |||| ||||| | | | || || || | |||| || | ||| |||| | ||| | || Sbjct 61 TCAAAGTAAACGCTTCGGGACCCCCCAGGACACTCAGTTAAGAGCATCAAGGGAGCGCCG 120 Query 153 AGAGGTA--GGGCTGGGTAATGCAGTA-CTCGCCGTGAGGCGGACC 195 ||||| | |||||||| | || ||| |||||| | |||||||| Sbjct 121 AGAGGCAGGGGGCTGGGACAGGCGGTAGCTCGCCTCGCGGCGGACC 166 >seq12 Length=19094261 Score = 77.0 bits (84), Expect = 4e-12 Identities = 139/194 (72%), Gaps = 11/194 (6%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| | Sbjct 5186823 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCAG-- 5186767 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCAC 126 ||| |||||||||||||||||| ||||| |||| | ||| | || || | | || Sbjct 5186766 TAACCAGCCTGCTTTGAACACTCTCATTTTTTCAAAGGAAATGCTTCGGACCCCCAGGAC 5186707 Query 127 AC-CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCG 181 || || | ||| |||| | ||| | | ||||| | |||||||| | || ||| ||| Sbjct 5186706 ACTCAGTTAAGAGCATCAAGGGAGCGCAGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCA 5186647 Query 182 CCGTGAGGCGGACC 195 || | || ||||| Sbjct 5186646 CCTCGCGGTGGACC 5186633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594746821230