Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq77426 105 7e-21 seq73732 105 7e-21 seq36412 100 3e-19 seq1 98.7 1e-18 seq12 91.5 2e-16 seq69174 86.0 6e-15 seq6542 77.0 3e-12 >seq77426 Length=502 Score = 105 bits (116), Expect = 7e-21 Identities = 130/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | || |||||| | | || Sbjct 397 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 338 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 337 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 280 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 279 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 226 >seq73732 Length=517 Score = 105 bits (116), Expect = 7e-21 Identities = 130/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | || |||||| | | || Sbjct 127 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 186 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 187 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 244 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 245 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 298 >seq36412 Length=839 Score = 100 bits (110), Expect = 3e-19 Identities = 129/174 (74%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | || | |||| | | || Sbjct 715 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGGATACTCCAGCTAGG 656 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 655 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 598 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 597 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 544 >seq1 Length=77392008 Score = 98.7 bits (108), Expect = 1e-18 Identities = 131/177 (74%), Gaps = 9/177 (5%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | || |||||| | | || Sbjct 37640987 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 37640928 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACC---GCCCGTAATG 128 |||||| ||||| || | |||||||||||||| ||||| | ||| | | || ||| Sbjct 37640927 AATAATGGAATA-GAGCTCCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGACC---ATG 37640873 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || || | ||| | |||||| | ||||| || || ||||||||| |||||| Sbjct 37640872 ATTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCTGCCAGAGGTGAAATCCTTGGA 37640816 >seq12 Length=19094261 Score = 91.5 bits (100), Expect = 2e-16 Identities = 127/174 (73%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||| |||||||||||| |||| ||||||||||||| || || |||||| | | || Sbjct 5186726 TTTCCTTTGAAAAAATGAGAGTGTTCAAAGCAGGCTGGTTACTGGAATACTCCAGCTAGG 5186785 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 5186786 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGATT 5186843 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | | || || ||||| | ||||| | | | |||||||||| ||| Sbjct 5186844 AAGAGGAATGGTTGGGGGCATTCGTATTGTGCCGCTAGAAGTGAAATTCTGGGA 5186897 >seq69174 Length=539 Score = 86.0 bits (94), Expect = 6e-15 Identities = 129/177 (73%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 13 TTTACTTTG-AAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATG 70 ||||||||| |||||||||||| ||||||||||||| | || |||||| | | | Sbjct 398 TTTACTTTGTAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAG 339 Query 71 GAATAATAGAATAGGACGTGCGGTTCTA-TTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 ||||||| ||||||||| | |||||||| |||||| || || | ||| | | |||| Sbjct 338 GAATAATGGAATAGGAC-TCCGGTTCTAGTTTTGTTGGGTTTTCGGAACTGGGGCCATGA 280 Query 130 TAAATACGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | | ||||| | ||||| | | |||||||||||||||| Sbjct 279 TTAAGAGGGACGGCCGGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 223 >seq6542 Length=1031 Score = 77.0 bits (84), Expect = 3e-12 Identities = 71/89 (80%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGA 72 ||||||||||| ||||||||| | ||| | || || |||||| |||| | |||||| Sbjct 254 TTTACTTTGAATAAATTAGAGTGCTCAGAACAAGCGTTTGCTTGAATGGTCGATCATGGA 195 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTT 101 |||||| || ||||| | ||||||||||| Sbjct 194 ATAATAAAAGAGGAC-TTCGGTTCTATTT 167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511610168800