Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq12383 158 4e-36 seq12107 102 2e-19 >seq12383 Length=521 Score = 158 bits (174), Expect = 4e-36 Identities = 142/177 (80%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 317 CAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGG---- 372 |||||||||||||||| || ||||| |||||| | ||||| ||| | ||| Sbjct 516 CAGCAACGCCGCGTGAAGGAAGAAGGTCTTCGGATTGTAAACTTCTTTTAGTGAGGGACG 457 Query 373 AAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA 432 ||| ||||||||| | | || ||||| ||||||||||||||||||||||||||||| Sbjct 456 AAGGACGTGACGGTACCTCATGAATAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTA 397 Query 433 ATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 ||||||||| ||| ||||||||||||| ||||| ||| |||||||| ||||||| || Sbjct 396 ATACGTAGGTGGCAAGCGTTATCCGGATTTACT-GGGTGTAAAGGGCGCGTAGGCGG 341 >seq12107 Length=530 Score = 102 bits (112), Expect = 2e-19 Identities = 81/96 (84%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||||||| ||| | ||||||||||||| ||| Sbjct 428 CGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATTCGAGCGTTATCCGGATTTA 369 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | ||| ||||||||||||||| |||| ||||| Sbjct 368 -TTGGGTTTAAAGGGTGCGTAGGCGGTTAAATAAGT 334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496422961280