Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq78564 192 1e-46 seq36 147 4e-33 seq113 122 2e-25 seq45255 118 2e-24 seq60394 114 2e-23 seq1123 114 2e-23 seq78593 109 1e-21 seq70704 107 4e-21 seq55715 107 4e-21 seq75729 100 5e-19 seq78576 96.9 7e-18 seq78583 95.1 2e-17 seq78544 95.1 2e-17 seq71519 95.1 2e-17 seq78581 91.5 3e-16 seq78568 87.8 3e-15 seq1498 87.8 3e-15 seq57407 86.0 1e-14 seq68451 82.4 1e-13 >seq78564 Length=8270741 Score = 192 bits (212), Expect = 1e-46 Identities = 201/259 (78%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 5768607 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 5768550 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | Sbjct 5768549 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGTCTAC 5768490 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCT-GGGGATAGAGCATT 249 ||| |||| |||| |||||| | | || | | ||||| | |||||| | | ||| Sbjct 5768489 CCTACGCCGACAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATAGGGGATCGGGGATT 5768430 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 5768429 GCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGAT 5768370 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 5768369 TAAGTCCCTGCCCTTTGTA 5768351 >seq36 Length=8391780 Score = 147 bits (162), Expect = 4e-33 Identities = 187/254 (74%), Gaps = 9/254 (4%) Strand=Plus/Minus Query 77 TAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 ||||||||| | ||| ||| | ||| || ||||| |||||||||||||||||||| Sbjct 4584973 TAGAGGGACAAGAGGCATTCAGTCACATG--AGATTGAG-CAATAACAGGTCTGTGATGC 4584917 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTT 194 |||||||||| | |||| |||| || |||| ||||| | || || || | ||| Sbjct 4584916 CCTTAGATGTCCGGGGCTGCACTTGCTCTACTCTGACTGGCTCAGCGTGTGTCTACCCTA 4584857 Query 195 GGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT 254 ||| |||| ||||||||| | || | | || || ||||||| | | ||||||| Sbjct 4584856 CTCCGACAGGTGTGGGTAATCCGTTGAACCCCATTCATGATGGGGATCGGGGATTGCAAC 4584797 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 |||| | | | ||| |||||| || |||||| ||| ||||| ||| |||| ||| || Sbjct 4584796 TATTCCCCATGAACAAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCG----TTATGT 4584741 Query 315 CCCTGCCCTTTGTA 328 |||||||||||||| Sbjct 4584740 CCCTGCCCTTTGTA 4584727 >seq113 Length=3570770 Score = 122 bits (134), Expect = 2e-25 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||| | |||| ||||| ||||||||||||| | Sbjct 1250423 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCCGGGCTGCACGTGCGCTACACTGACTG 1250482 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 || || || | ||| |||| |||| |||||| | | || | | ||||| Sbjct 1250483 GCTCAGCGTGTGTCTACCCTACGCCGACAGGTGCGGGTAACCCGTTGAACCCCATTCGTG 1250542 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAAT 275 ||||||| | | |||||||||||| | | | |||||||||| Sbjct 1250543 ATGGGGATTGGGGATTGCAATTATTCCCCATGAACGAGGAAT 1250584 >seq45255 Length=691 Score = 118 bits (130), Expect = 2e-24 Identities = 140/187 (75%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||||| | | | |||| || | ||||| ||||||||||||||||| Sbjct 195 CTTCTTAGAGGGACAAGTGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTGA 138 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 137 TGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGTCTACC 78 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 || |||| |||| |||||| | | || | | ||||| ||||||| | | ||||| Sbjct 77 CTACGCCGACAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGC 18 Query 252 AATTATT 258 ||||||| Sbjct 17 AATTATT 11 >seq60394 Length=566 Score = 114 bits (126), Expect = 2e-23 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| |||| |||||| | | || | | ||||| ||||||| | | ||||||||| Sbjct 1 GCCGACAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATT 60 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||||| ||| Sbjct 61 ATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATTAAGTC 120 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 121 CCTGCCCTTTGTA 133 >seq1123 Length=66662 Score = 114 bits (126), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||| | ||| | |||| || | ||||| |||||||||||||||||| Sbjct 43023 TCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTGAT 43080 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||| | |||| ||||||||||||||||||| | || || || | || Sbjct 43081 GCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGTCTACCC 43140 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 |||| |||| |||||| | | || | | ||||| ||||||| | | |||||| Sbjct 43141 CACGCCGACAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCA 43200 Query 253 ATTATTGCTCTTCAACG 269 |||||| | | | |||| Sbjct 43201 ATTATTCCCCATGAACG 43217 >seq78593 Length=15526681 Score = 109 bits (120), Expect = 1e-21 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| ||||||| | | |||||||||||| | | | |||||||||| || |||||| || Sbjct 3149208 TCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGC 3149267 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| ||||||||||| ||||| |||||||||| Sbjct 3149268 GGGTCATAAGCTCGCGTTGATTAAGTCCCAGCCCTTTGTA 3149307 >seq70704 Length=503 Score = 107 bits (118), Expect = 4e-21 Identities = 80/94 (85%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 ||||||| | | |||||||||||| | | | |||||||||| || |||||| ||| |||| Sbjct 226 TGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCA 167 Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||| ||||||||||| |||||||||||||||| Sbjct 166 TAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTA 133 >seq55715 Length=623 Score = 107 bits (118), Expect = 4e-21 Identities = 85/101 (84%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 229 TCGTGCTGGGGATAGAGC-ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287 ||||| ||||||| | | |||||||||||| | | | |||||||||| || |||||| | Sbjct 616 TCGTGATGGGGATCGGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTG 557 Query 288 CGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||||| ||| ||||||||||| |||||||||||||||| Sbjct 556 CGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTA 516 >seq75729 Length=509 Score = 100 bits (110), Expect = 5e-19 Identities = 85/101 (84%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | || ||||| |||||||||||||||| Sbjct 226 CTTCTTAGAGGGACAAGTGGCATTCAGCC-ACCCAATATTGAG-CAATAACAGGTCTGTG 283 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||||||||| | |||| ||||||||||||||||||| Sbjct 284 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAC 324 >seq78576 Length=21394870 Score = 96.9 bits (106), Expect = 7e-18 Identities = 86/105 (82%), Gaps = 11/105 (10%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC--TCA---AGCCGATGGAAGTTTGAGGCAATAACAGGTC 126 |||||||||||||| | ||| ||| | ||||| ||||| |||||||||||| Sbjct 14682413 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCCGATA-----TTGAG-CAATAACAGGTC 14682360 Query 127 TGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||||||||||||| | |||| ||||||||||||||||||| Sbjct 14682359 TGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAC 14682315 >seq78583 Length=22294289 Score = 95.1 bits (104), Expect = 2e-17 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||| | |||| ||||||||||||||||||| | || || || Sbjct 13406274 TCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGT 13406333 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 | ||| |||| |||| |||||| | | || | | ||||| ||||||| | Sbjct 13406334 GTCTACCCTACGCCGACAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGG 13406393 Query 245 GCATTGCAATTATTGCTCTTCAACG 269 | |||||||||||| | | | |||| Sbjct 13406394 GGATTGCAATTATTCCCCATGAACG 13406418 >seq78544 Length=15366631 Score = 95.1 bits (104), Expect = 2e-17 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| |||||| | | |||||||||||| | | | |||||||||| || |||||| || Sbjct 8784656 TCGTGATGGGGACTGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGC 8784715 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| | |||||||| ||||||||||||| || Sbjct 8784716 GGGTCATAAGCTCACGTTGATTGAGTCCCTGCCCTTTATA 8784755 >seq71519 Length=530 Score = 95.1 bits (104), Expect = 2e-17 Identities = 82/98 (84%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 202 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 259 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 |||||||||||||| | |||| |||||||||||||||| Sbjct 260 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACT 297 >seq78581 Length=17267600 Score = 91.5 bits (100), Expect = 3e-16 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGT 290 ||| ||||||| | | |||||||||||| | | | || ||||||| || ||||| ||| Sbjct 1909277 GTGATGGGGATCGGGGATTGCAATTATTCCCCATGAATGAGGAATTCCCAGTAAATGCGG 1909336 Query 291 GTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||| ||||||||| |||||||||||||||| Sbjct 1909337 GTCATAAGCTAGCGTTGATTTAGTCCCTGCCCTTTGTA 1909374 >seq78568 Length=17655681 Score = 87.8 bits (96), Expect = 3e-15 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 |||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||||| Sbjct 9868279 ATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATTAA 9868220 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 9868219 GTCCCTGCCCTTTGTA 9868204 >seq1498 Length=41128 Score = 87.8 bits (96), Expect = 3e-15 Identities = 78/94 (83%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 2571 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 2628 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 |||||||||||||| | |||| |||||||||||| Sbjct 2629 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTA 2662 >seq57407 Length=556 Score = 86.0 bits (94), Expect = 1e-14 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 117 ATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||||||||||||||||||||||| | |||| ||||||||||||||||||| Sbjct 465 ATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAC 519 >seq68451 Length=516 Score = 82.4 bits (90), Expect = 1e-13 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 266 AACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTT 325 |||||||||| || |||||| ||| ||||| ||| ||||||||||| ||||||||||||| Sbjct 516 AACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTT 457 Query 326 GTA 328 ||| Sbjct 456 GTA 454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946455548160