Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq135 98.7 8e-16
seq140 86.0 5e-12
seq78549 82.4 6e-11
>seq135
Length=2957239
Score = 98.7 bits (108), Expect = 8e-16
Identities = 92/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| ||||| |||||| | | ||||| ||||||||||| || || ||||
Sbjct 2803090 TGGAGCGATTCAGCCAGGAAGTGCAAATCCCAGAGGCTCGTTGTTTCTATGGATTTCAGA 2803149
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
|| || |||||||| |||||||||||||||||| | || || || || |||||||
Sbjct 2803150 TTCTAATTGAGAATGTTCACTCGGAGATGTACAGTTTGCTAATAGACACTTACATCA 2803206
>seq140
Length=3053534
Score = 86.0 bits (94), Expect = 5e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388
||||| || ||| || ||||| || ||||||||||| ||||||| || | |||||
Sbjct 17331 TCTACCCGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAAGAAGAGGTCCCTGGCTCGC 17390
Query 66389 TGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT 66448
|||||||| | ||| || || || ||| || |||||||| ||||| |||||
Sbjct 17391 TGCTCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCAA 17450
Query 66449 GGTTCCAGGTAGATGGCGAA 66468
|| || ||||||||||| ||
Sbjct 17451 GGCTCAAGGTAGATGGCAAA 17470
>seq78549
Length=11360908
Score = 82.4 bits (90), Expect = 6e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| || || || || || | || || || |||||||| ||||||||||
Sbjct 7631819 TGGAGCGATTCAGCCAAGAAGTACAGGTAACAGAAGCACGCTGTTTCTATGGCTTCCAGA 7631760
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370
|||| ||||| || | || || || ||||||||| | ||||| ||||| |||||
Sbjct 7631759 TTGCTATGGAAAACATACATTCAGAAATGTACAGTCTGCTCATAGATACTTACAT 7631705
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397187178930800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |