Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13]
70 sequences; 2,049,536,252 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq41 170 3e-40
seq33 165 1e-38
seq21 156 6e-36
seq29 143 4e-32
seq66 129 9e-28
seq63 113 7e-23
>seq41
Length=19343079
Score = 170 bits (188), Expect = 3e-40
Identities = 182/234 (78%), Gaps = 5/234 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||| |||||| ||||| ||| |||||| ||||| |
Sbjct 4165794 GTACAAAGGGCAGGGACTTAATCAACATGAGCTT-ATGACCCGCACTTACTGAGAATT-C 4165737
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119
|||||| | | | ||||||||| ||||||||| ||||| ||||| || ||
Sbjct 4165736 CTCGTTCATGGGGCATAATTGCAATCC-CTATCCCCACCACGAATGGGGTTCAACAGGTT 4165678
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| |||||||||| ||| | | || || ||| ||||||||||||||||||
Sbjct 4165677 ACCCACACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 4165618
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 4165617 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 4165565
>seq33
Length=109106476
Score = 165 bits (182), Expect = 1e-38
Identities = 180/234 (77%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||| |
Sbjct 49721277 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 49721334
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | || |||||||| | |||||||||| || ||||| | ||
Sbjct 49721335 CTCGTTCATGGGGAATAATTGCAACCCCCGATCCCCATCATGAATGGGGTTCAACGGGTT 49721394
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| |||||| || ||| | | || || ||| ||||||||| || |||||
Sbjct 49721395 ACCCGCACCTGTTGGTGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGTGCACGTGCA 49721454
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | ||||||||||||||||||||||| |||||| ||||| ||| |||||
Sbjct 49721455 GCCCCGGACATCTAAGGGCATCACAGACCTCTTATTG-CTCAATCTTGGGTGGC 49721507
Score = 138 bits (152), Expect = 2e-30
Identities = 163/217 (75%), Gaps = 3/217 (1%)
Strand=Plus/Plus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
|||||||||||||||| || ||||| |||||| ||||| ||| ||||||||||||| ||
Sbjct 88879736 TACAAAGGGCAGGGACTTAATCAACATGAGCTT-ATGACCCGCACTTACTAGGAATT-CC 88879793
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTA 120
|| || | | || |||| |||| | |||| |||||| | | ||||| | |||
Sbjct 88879794 TCATTCATGGGGAATAATTACAATCCCCGATCCACATCACAAACAGGGTTCAATGGGTTA 88879853
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||| | ||||| || ||| | | || || || | |||||||||| | ||||| |
Sbjct 88879854 CCCACAACTGTCAGCATAGGGCAGACACACGCTGGGTCAGTCAGTGTAGCACACGTGCAG 88879913
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
||| |||||||||||||| ||||||||||||||||
Sbjct 88879914 CCCCAGACATCTAAGGGCATTACAGACCTGTTATTGC 88879950
>seq21
Length=203625132
Score = 156 bits (172), Expect = 6e-36
Identities = 178/234 (76%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||||||||| ||||| ||| ||| || |||||| |
Sbjct 158432166 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTCCTGGGAATT-C 158432109
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
||| || | | || ||||||||| ||||||||||||| ||||||| ||
Sbjct 158432108 CTCATTCATGGGGAATAATTGCAATCCCTGATCCCCATCACGAATGGTGTTCAAAGGGTT 158432049
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| | |||| ||| ||| | | || || ||| |||||||| |||||||||
Sbjct 158432048 ACCCACATCTGTTGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAACGCGCGTGCA 158431989
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| ||||||||||||||||||||||||||||| ||| | ||| |||||
Sbjct 158431988 GCCCCAGTCATCTAAGGGCATCACAGACCTGTTATTG-CTCGATCTTGGGTGGC 158431936
>seq29
Length=37982970
Score = 143 bits (158), Expect = 4e-32
Identities = 173/230 (75%), Gaps = 8/230 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||| ||||| || |||| | || ||| |||||| || |||||| |||||| |
Sbjct 31773242 GTACAAAGGGCTGGGACTTAATCAATGTGACCTT-ATGACTTGCACTTACTGGGAATT-C 31773299
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119
|||||| | | || ||||||||| | ||||||||||||| ||||| || ||
Sbjct 31773300 CTCGTTCATGGGGAATAATTGCAATCCCCAATCCCCATCACGAATGGGGTTCAACAGGTT 31773359
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTC----GTTGAATACATCAGTGTAGCGCGCG 175
|||| ||||||| || ||| | | || | | ||| |||||||||| || |
Sbjct 31773360 ACCCACACCTGTCAGCGTAGGGTAGACACACACACGCTGAGCCAGTCAGTGTAGCACGTG 31773419
Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
||| |||| | |||||||||||||||||||||| ||||||| ||||| ||
Sbjct 31773420 TGCAGCCCCGGACATCTAAGGGCATCACAGACCCGTTATTG-CTCAATCT 31773468
Score = 113 bits (124), Expect = 7e-23
Identities = 158/216 (73%), Gaps = 12/216 (6%)
Strand=Plus/Plus
Query 23 CAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGC 82
|||| ||||||| |||| ||| |||||| |||||| ||||||| | | || |||||
Sbjct 16054865 CAACAGGAGCTTG-TGACCCGCACTTACTGGGAATT-CCTCGTTCATGGGGAATAATTGT 16054922
Query 83 AATGATCTATCCCCATCACGATGAAAT----TTCAAAGA-TTACCCGGACCTGTCGGCCA 137
||| | ||||||||||| |||| ||||| | |||| | ||||||| ||
Sbjct 16054923 AATCCCCAATCCCCATCAC----AAATGGGGTTCAATGGGTTACTTGCACCTGTCAGCAT 16054978
Query 138 AGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGG 197
||| | | || | ||| ||||||||| |||| ||| |||| | ||| |||||||
Sbjct 16054979 AGGGTAGACACACCCTGAGCCAGTCAGTGTAGTGCGCATGCAGCCCTGGACACCTAAGGG 16055038
Query 198 CATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
||||||||||||||||||| ||||| || |||||
Sbjct 16055039 CATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 16055073
>seq66
Length=60305753
Score = 129 bits (142), Expect = 9e-28
Identities = 175/238 (74%), Gaps = 12/238 (5%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||| ||||||||| || |||| || ||||| ||||| | |||||| |||||| |
Sbjct 31676658 GTACAAAAGGCAGGGACTTAATCAATGCAAGCTT-ATGACCTGTACTTACTGGGAATT-C 31676601
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116
||| || | | || ||||||||| | ||||||||| | |||| ||||| |
Sbjct 31676600 CTCTTTCATGGGGAATAATTGCAATCCCCAATCCCCATCTC----AAATGGGGTTCAACG 31676545
Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175
|||||| |||||| ||| ||| | | || || ||| |||||||||| | |
Sbjct 31676544 GGTTACCCACACCTGTTGGCATAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCATGTG 31676485
Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
||| |||| | |||||||||||| |||||||||||||| || |||||||| |||||
Sbjct 31676484 TGCAGCCCTGGACATCTAAGGGCTTCACAGACCTGTTAATG-CTCAAACTCGGGTGGC 31676428
Score = 86.0 bits (94), Expect = 9e-15
Identities = 69/81 (85%), Gaps = 2/81 (2%)
Strand=Plus/Minus
Query 145 AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 204
|| |||||| | || |||||||||| || |||| |||| | ||||||||||||||||||
Sbjct 57740555 AGTCTCGTTCATTAG-TCAGTGTAGCACGTGTGCAGCCCTGGACATCTAAGGGCATCACA 57740497
Query 205 GACCTGTTATTGCCTCAAACT 225
|||||||||||| ||||| ||
Sbjct 57740496 GACCTGTTATTG-CTCAATCT 57740477
>seq63
Length=80678228
Score = 113 bits (124), Expect = 7e-23
Identities = 109/136 (80%), Gaps = 3/136 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||| |||
Sbjct 23827222 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 23827165
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119
|||||| | | || ||||||||| | |||||||||||| ||| || | | ||
Sbjct 23827164 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 23827105
Query 120 ACCCGGACCTGTCGGC 135
||||| ||||||||||
Sbjct 23827104 ACCCGCACCTGTCGGC 23827089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751999490050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |