Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq41 170 3e-40 seq33 165 1e-38 seq21 156 6e-36 seq29 143 4e-32 seq66 129 9e-28 seq63 113 7e-23 >seq41 Length=19343079 Score = 170 bits (188), Expect = 3e-40 Identities = 182/234 (78%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| |||||| ||||| ||| |||||| ||||| | Sbjct 4165794 GTACAAAGGGCAGGGACTTAATCAACATGAGCTT-ATGACCCGCACTTACTGAGAATT-C 4165737 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | | ||||||||| ||||||||| ||||| ||||| || || Sbjct 4165736 CTCGTTCATGGGGCATAATTGCAATCC-CTATCCCCACCACGAATGGGGTTCAACAGGTT 4165678 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| |||||||||| ||| | | || || ||| |||||||||||||||||| Sbjct 4165677 ACCCACACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 4165618 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 4165617 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 4165565 >seq33 Length=109106476 Score = 165 bits (182), Expect = 1e-38 Identities = 180/234 (77%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||| | Sbjct 49721277 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 49721334 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| | |||||||||| || ||||| | || Sbjct 49721335 CTCGTTCATGGGGAATAATTGCAACCCCCGATCCCCATCATGAATGGGGTTCAACGGGTT 49721394 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||| || ||| | | || || ||| ||||||||| || ||||| Sbjct 49721395 ACCCGCACCTGTTGGTGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGTGCACGTGCA 49721454 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | ||||||||||||||||||||||| |||||| ||||| ||| ||||| Sbjct 49721455 GCCCCGGACATCTAAGGGCATCACAGACCTCTTATTG-CTCAATCTTGGGTGGC 49721507 Score = 138 bits (152), Expect = 2e-30 Identities = 163/217 (75%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||||||||||||| || ||||| |||||| ||||| ||| ||||||||||||| || Sbjct 88879736 TACAAAGGGCAGGGACTTAATCAACATGAGCTT-ATGACCCGCACTTACTAGGAATT-CC 88879793 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTA 120 || || | | || |||| |||| | |||| |||||| | | ||||| | ||| Sbjct 88879794 TCATTCATGGGGAATAATTACAATCCCCGATCCACATCACAAACAGGGTTCAATGGGTTA 88879853 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| | ||||| || ||| | | || || || | |||||||||| | ||||| | Sbjct 88879854 CCCACAACTGTCAGCATAGGGCAGACACACGCTGGGTCAGTCAGTGTAGCACACGTGCAG 88879913 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||| |||||||||||||| |||||||||||||||| Sbjct 88879914 CCCCAGACATCTAAGGGCATTACAGACCTGTTATTGC 88879950 >seq21 Length=203625132 Score = 156 bits (172), Expect = 6e-36 Identities = 178/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| ||| || |||||| | Sbjct 158432166 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTCCTGGGAATT-C 158432109 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||| || | | || ||||||||| ||||||||||||| ||||||| || Sbjct 158432108 CTCATTCATGGGGAATAATTGCAATCCCTGATCCCCATCACGAATGGTGTTCAAAGGGTT 158432049 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | |||| ||| ||| | | || || ||| |||||||| ||||||||| Sbjct 158432048 ACCCACATCTGTTGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAACGCGCGTGCA 158431989 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| ||||||||||||||||||||||||||||| ||| | ||| ||||| Sbjct 158431988 GCCCCAGTCATCTAAGGGCATCACAGACCTGTTATTG-CTCGATCTTGGGTGGC 158431936 >seq29 Length=37982970 Score = 143 bits (158), Expect = 4e-32 Identities = 173/230 (75%), Gaps = 8/230 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||| ||||| || |||| | || ||| |||||| || |||||| |||||| | Sbjct 31773242 GTACAAAGGGCTGGGACTTAATCAATGTGACCTT-ATGACTTGCACTTACTGGGAATT-C 31773299 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| || || Sbjct 31773300 CTCGTTCATGGGGAATAATTGCAATCCCCAATCCCCATCACGAATGGGGTTCAACAGGTT 31773359 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTC----GTTGAATACATCAGTGTAGCGCGCG 175 |||| ||||||| || ||| | | || | | ||| |||||||||| || | Sbjct 31773360 ACCCACACCTGTCAGCGTAGGGTAGACACACACACGCTGAGCCAGTCAGTGTAGCACGTG 31773419 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 ||| |||| | |||||||||||||||||||||| ||||||| ||||| || Sbjct 31773420 TGCAGCCCCGGACATCTAAGGGCATCACAGACCCGTTATTG-CTCAATCT 31773468 Score = 113 bits (124), Expect = 7e-23 Identities = 158/216 (73%), Gaps = 12/216 (6%) Strand=Plus/Plus Query 23 CAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGC 82 |||| ||||||| |||| ||| |||||| |||||| ||||||| | | || ||||| Sbjct 16054865 CAACAGGAGCTTG-TGACCCGCACTTACTGGGAATT-CCTCGTTCATGGGGAATAATTGT 16054922 Query 83 AATGATCTATCCCCATCACGATGAAAT----TTCAAAGA-TTACCCGGACCTGTCGGCCA 137 ||| | ||||||||||| |||| ||||| | |||| | ||||||| || Sbjct 16054923 AATCCCCAATCCCCATCAC----AAATGGGGTTCAATGGGTTACTTGCACCTGTCAGCAT 16054978 Query 138 AGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGG 197 ||| | | || | ||| ||||||||| |||| ||| |||| | ||| ||||||| Sbjct 16054979 AGGGTAGACACACCCTGAGCCAGTCAGTGTAGTGCGCATGCAGCCCTGGACACCTAAGGG 16055038 Query 198 CATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||||||||||||||||||| ||||| || ||||| Sbjct 16055039 CATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 16055073 >seq66 Length=60305753 Score = 129 bits (142), Expect = 9e-28 Identities = 175/238 (74%), Gaps = 12/238 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||||||||| || |||| || ||||| ||||| | |||||| |||||| | Sbjct 31676658 GTACAAAAGGCAGGGACTTAATCAATGCAAGCTT-ATGACCTGTACTTACTGGGAATT-C 31676601 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116 ||| || | | || ||||||||| | ||||||||| | |||| ||||| | Sbjct 31676600 CTCTTTCATGGGGAATAATTGCAATCCCCAATCCCCATCTC----AAATGGGGTTCAACG 31676545 Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 |||||| |||||| ||| ||| | | || || ||| |||||||||| | | Sbjct 31676544 GGTTACCCACACCTGTTGGCATAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCATGTG 31676485 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| |||| | |||||||||||| |||||||||||||| || |||||||| ||||| Sbjct 31676484 TGCAGCCCTGGACATCTAAGGGCTTCACAGACCTGTTAATG-CTCAAACTCGGGTGGC 31676428 Score = 86.0 bits (94), Expect = 9e-15 Identities = 69/81 (85%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 145 AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 204 || |||||| | || |||||||||| || |||| |||| | |||||||||||||||||| Sbjct 57740555 AGTCTCGTTCATTAG-TCAGTGTAGCACGTGTGCAGCCCTGGACATCTAAGGGCATCACA 57740497 Query 205 GACCTGTTATTGCCTCAAACT 225 |||||||||||| ||||| || Sbjct 57740496 GACCTGTTATTG-CTCAATCT 57740477 >seq63 Length=80678228 Score = 113 bits (124), Expect = 7e-23 Identities = 109/136 (80%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||| ||| Sbjct 23827222 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 23827165 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| | | || ||||||||| | |||||||||||| ||| || | | || Sbjct 23827164 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 23827105 Query 120 ACCCGGACCTGTCGGC 135 ||||| |||||||||| Sbjct 23827104 ACCCGCACCTGTCGGC 23827089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999490050