Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq41 95.1 7e-18 seq66 91.5 8e-17 seq29 89.7 3e-16 seq32 80.6 1e-13 seq24 77.0 2e-12 seq21 77.0 2e-12 seq1 75.2 6e-12 >seq41 Length=19343079 Score = 95.1 bits (104), Expect = 7e-18 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| | | |||| ||||| |||| Sbjct 4165264 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCTGGTGGGTCATGGGAATAACGCCGCCG 4165205 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| ||||| ||||| ||||| ||| |||| |||||||||||||||||||||| Sbjct 4165204 GATTGCTAGTTGGCATTGTTTATGGTCGGAACTATGACGGTATCTGATCGTCTTCGA 4165148 >seq66 Length=60305753 Score = 91.5 bits (100), Expect = 8e-17 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| | ||| |||| |||| |||| ||||| | || Sbjct 29159271 GAACCCAAAGACTTTGGTTTCCCAGAAGCTGCCCAGCGGGTCATGGGAATAACGCCACCG 29159330 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||| ||||||| ||| ||||| ||| |||| |||||||||||||| ||||| Sbjct 29159331 GATCGCTAGTCGCCATCGTTTATGGTCGGTACTATGACGGTATCTGATCATCTTC 29159385 >seq29 Length=37982970 Score = 89.7 bits (98), Expect = 3e-16 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||| |||| |||| || ||| |||| ||| |||| ||||| || | Sbjct 16055347 GAACCCAAAGATTTTGGTTTCCCGGAAGCTGCCTGGCGGGTCATGGGAATAACGTCACTG 16055406 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||||| |||| ||||| |||| ||||||| |||||||||| ||||| || Sbjct 16055407 GATCGCTAGTCAGCATCGTTTATGGTTGGAACTACGATGGTATCTGATTGTCTTTGA 16055463 Score = 86.0 bits (94), Expect = 3e-15 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| |||| ||| Sbjct 31773661 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAATGCCGCTG 31773720 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||||| |||| |||| |||| ||||| | |||||||||| |||||||| Sbjct 31773721 GATCGCTAGTCAGCATCGTTTGTGGTTGGAACTACAATGGTATCTGATAGTCTTCGA 31773777 >seq32 Length=36309902 Score = 80.6 bits (88), Expect = 1e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 49 ATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGAT 108 ||||| |||| |||| ||||||||||| ||||| ||| |||||||||||||||||| Sbjct 25234111 ATAACGCCGCCGGATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGAT 25234170 Query 109 CGTCTTCGA 117 ||||||||| Sbjct 25234171 CGTCTTCGA 25234179 >seq24 Length=75875076 Score = 77.0 bits (84), Expect = 2e-12 Identities = 87/117 (74%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||| |||| |||| | ||| |||| ||| |||| ||||| || Sbjct 57220363 GAACCCAAAGAGTTTGGTTTCCTGGAAGCTGCCCAGCATGTCATGGGAATAACGCTGCTG 57220422 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||| ||||||| ||||| ||| | ||||| || ||||||||||| ||| || Sbjct 57220423 GATCACTAATCGGCATTGTTTATGGTCAGAACTACAACAGTATCTGATCGACTTTGA 57220479 >seq21 Length=203625132 Score = 77.0 bits (84), Expect = 2e-12 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 56 CGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||| |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||| Sbjct 32771787 CGCCGGATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTC 32771846 Query 116 GA 117 || Sbjct 32771847 GA 32771848 >seq1 Length=270692262 Score = 75.2 bits (82), Expect = 6e-12 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 49 ATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGAT 108 ||||| |||| |||| ||||||||||| ||||| ||| |||||||| ||||||||| Sbjct 197682814 ATAACGCCGCCGGATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACAGTATCTGAT 197682873 Query 109 CGTCTTCGA 117 ||||||||| Sbjct 197682874 CGTCTTCGA 197682882 Score = 71.6 bits (78), Expect = 8e-11 Identities = 53/62 (85%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 56 CGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||| ||| ||||||||||| ||||| ||| ||||||||||||||||||||||||| Sbjct 241429242 CGCCAGATAGCTAGTCGGCATGGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTC 241429301 Query 116 GA 117 || Sbjct 241429302 GA 241429303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278399817300