Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13]
70 sequences; 2,049,536,252 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq41 95.1 7e-18
seq66 91.5 8e-17
seq29 89.7 3e-16
seq32 80.6 1e-13
seq24 77.0 2e-12
seq21 77.0 2e-12
seq1 75.2 6e-12
>seq41
Length=19343079
Score = 95.1 bits (104), Expect = 7e-18
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||||||||||||||| |||| || ||| |||| | | |||| ||||| ||||
Sbjct 4165264 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCTGGTGGGTCATGGGAATAACGCCGCCG 4165205
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||| ||||| ||||| ||||| ||| |||| ||||||||||||||||||||||
Sbjct 4165204 GATTGCTAGTTGGCATTGTTTATGGTCGGAACTATGACGGTATCTGATCGTCTTCGA 4165148
>seq66
Length=60305753
Score = 91.5 bits (100), Expect = 8e-17
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||||||||||||||| |||| | ||| |||| |||| |||| ||||| | ||
Sbjct 29159271 GAACCCAAAGACTTTGGTTTCCCAGAAGCTGCCCAGCGGGTCATGGGAATAACGCCACCG 29159330
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115
|||| ||||||| ||| ||||| ||| |||| |||||||||||||| |||||
Sbjct 29159331 GATCGCTAGTCGCCATCGTTTATGGTCGGTACTATGACGGTATCTGATCATCTTC 29159385
>seq29
Length=37982970
Score = 89.7 bits (98), Expect = 3e-16
Identities = 90/117 (77%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||| |||| |||| || ||| |||| ||| |||| ||||| || |
Sbjct 16055347 GAACCCAAAGATTTTGGTTTCCCGGAAGCTGCCTGGCGGGTCATGGGAATAACGTCACTG 16055406
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| |||||| |||| ||||| |||| ||||||| |||||||||| ||||| ||
Sbjct 16055407 GATCGCTAGTCAGCATCGTTTATGGTTGGAACTACGATGGTATCTGATTGTCTTTGA 16055463
Score = 86.0 bits (94), Expect = 3e-15
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||||||||||||||| |||| || ||| |||| ||| |||| |||| |||
Sbjct 31773661 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAATGCCGCTG 31773720
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| |||||| |||| |||| |||| ||||| | |||||||||| ||||||||
Sbjct 31773721 GATCGCTAGTCAGCATCGTTTGTGGTTGGAACTACAATGGTATCTGATAGTCTTCGA 31773777
>seq32
Length=36309902
Score = 80.6 bits (88), Expect = 1e-13
Identities = 59/69 (86%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 49 ATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGAT 108
||||| |||| |||| ||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 25234111 ATAACGCCGCCGGATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGAT 25234170
Query 109 CGTCTTCGA 117
|||||||||
Sbjct 25234171 CGTCTTCGA 25234179
>seq24
Length=75875076
Score = 77.0 bits (84), Expect = 2e-12
Identities = 87/117 (74%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||| |||| |||| | ||| |||| ||| |||| ||||| ||
Sbjct 57220363 GAACCCAAAGAGTTTGGTTTCCTGGAAGCTGCCCAGCATGTCATGGGAATAACGCTGCTG 57220422
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| ||| ||||||| ||||| ||| | ||||| || ||||||||||| ||| ||
Sbjct 57220423 GATCACTAATCGGCATTGTTTATGGTCAGAACTACAACAGTATCTGATCGACTTTGA 57220479
>seq21
Length=203625132
Score = 77.0 bits (84), Expect = 2e-12
Identities = 54/62 (87%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 56 CGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115
|||| |||| ||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 32771787 CGCCGGATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTC 32771846
Query 116 GA 117
||
Sbjct 32771847 GA 32771848
>seq1
Length=270692262
Score = 75.2 bits (82), Expect = 6e-12
Identities = 58/69 (84%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 49 ATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGAT 108
||||| |||| |||| ||||||||||| ||||| ||| |||||||| |||||||||
Sbjct 197682814 ATAACGCCGCCGGATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACAGTATCTGAT 197682873
Query 109 CGTCTTCGA 117
|||||||||
Sbjct 197682874 CGTCTTCGA 197682882
Score = 71.6 bits (78), Expect = 8e-11
Identities = 53/62 (85%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 56 CGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115
|||| ||| ||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 241429242 CGCCAGATAGCTAGTCGGCATGGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTC 241429301
Query 116 GA 117
||
Sbjct 241429302 GA 241429303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278399817300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |