Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq24 145 3e-32 seq25 141 4e-31 seq66 125 3e-26 seq64 118 4e-24 seq27 111 7e-22 seq1 109 2e-21 seq36 86.0 3e-14 >seq24 Length=75875076 Score = 145 bits (160), Expect = 3e-32 Identities = 109/128 (85%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 ||| || || | |||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 40358903 AGCGTATGTGCTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGG 40358962 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||||||||||||||| || |||||| ||| ||||||||||| ||||| | ||||||| Sbjct 40358963 AAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTAT 40359022 Query 676 AGGGGCGA 683 |||||||| Sbjct 40359023 AGGGGCGA 40359030 >seq25 Length=45393205 Score = 141 bits (156), Expect = 4e-31 Identities = 99/113 (88%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 41952146 GGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 41952205 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||| || |||||| ||| ||||||||||| ||||| | ||||||||||||| Sbjct 41952206 GGCCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCTGACCTGGGTATAGGGGC 41952258 Score = 96.9 bits (106), Expect = 1e-17 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||| | Sbjct 42711850 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAGT 42711791 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 | |||| ||||||||||| ||||||| || | ||||| ||||||| ||||||| Sbjct 42711790 ACTGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGG 42711733 Score = 75.2 bits (82), Expect = 5e-11 Identities = 64/79 (81%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 37449647 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 37449706 Query 100 ATTGGCCAGAGACCGATAG 118 | ||| ||||||||||| Sbjct 37449707 ACCGGCACGAGACCGATAG 37449725 >seq66 Length=60305753 Score = 125 bits (138), Expect = 3e-26 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || | ||||| ||||| ||||||||||||||| |||| |||||| || Sbjct 31680553 GAGCATACGTGCTAGGACCTGAAAGGTGGTGAACTATGCCTAGGCAGGGCAAAGCCAAAG 31680612 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| | |||||| ||| ||||||||||| ||||| | |||||| Sbjct 31680613 GAAACTCTGGTGGAGGTCCATAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTA 31680672 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 31680673 TAGGGGCGA 31680681 Score = 82.4 bits (90), Expect = 3e-13 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 79 AAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGA 138 ||| | | ||||| |||||||| ||| ||||||||||| ||||||| || | || Sbjct 44458421 AAACTCCATCTAAGGCTAAATACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGA 44458480 Query 139 AAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||| ||||||| |||||| | |||||||| || || ||||||| ||| | ||| || Sbjct 44458481 AAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAA 44458538 >seq64 Length=84437661 Score = 118 bits (130), Expect = 4e-24 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 44915938 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 44915997 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||| ||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 44915998 ACCGGCACGAGACTGATAGTTAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 44916057 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 44916058 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 44916097 >seq27 Length=40567063 Score = 111 bits (122), Expect = 7e-22 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 30733771 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 30733712 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 30733711 ACTGGCATGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 30733652 Query 160 AGAGAGTTAAAAAG 173 |||||||| || || Sbjct 30733651 AGAGAGTTCAAGAG 30733638 >seq1 Length=270692262 Score = 109 bits (120), Expect = 2e-21 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||||| || | ||||| ||||||||||||||||||| |||| ||| Sbjct 204041320 GAGCATGAGCATATGTGCTACGACCCCAAAGATGGTGAACTATGCCAAGGCAGGGCAAAG 204041379 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || || ||| ||| | | ||||||| || || | Sbjct 204041380 CCAGAGGAAACTCTGGTGGAGGTCCGTAGTGGTCCTGACATACAAATCGGTCATCTGAAC 204041439 Query 669 TGGGTATAGGGGCGA 683 |||||||||||| || Sbjct 204041440 TGGGTATAGGGGTGA 204041454 Score = 102 bits (112), Expect = 3e-19 Identities = 118/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || |||| |||||| | | ||||| ||||| | Sbjct 204040636 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAGT 204040695 Query 100 ATTGGCCAGAGACCGAT-AGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | | |||||||| || |||| || || | ||||| ||||||| |||||| | Sbjct 204040696 ACCAACACAAGACCGATTAGTCAACAAATACTGTAAGGGAAAGTTGAAAAGAACTTTGAA 204040755 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || ||||||||||||| ||| || Sbjct 204040756 GAGAGAGTTCAAGAGGGTGTGAAATTGTTGAGAGGTAA 204040793 Score = 93.3 bits (102), Expect = 2e-16 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 ||| || || | |||||| ||||||||| ||||||||||| |||||||||||||||| Sbjct 200672703 AGCGTATGTGCTAGGACCCAAAAGATGGTCAACTATGCCTGGGCAGGGTGAAGCCAGAGG 200672762 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGT 641 ||||||||||||||| | |||| || Sbjct 200672763 AAACTCTGGTGGAGGTCCACAGCAGT 200672788 Score = 75.2 bits (82), Expect = 5e-11 Identities = 85/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 109682168 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 109682109 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 | || |||||| |||| ||||||| || | ||||| ||||||| ||| Sbjct 109682108 ACCAGCACGAGACCAATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACT 109682055 >seq36 Length=28007247 Score = 86.0 bits (94), Expect = 3e-14 Identities = 109/150 (73%), Gaps = 5/150 (3%) Strand=Plus/Plus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92 |||| ||||| | ||| ||||||||||||| | || |||| |||||| | | ||||| Sbjct 19036902 CTTCTCCGAGTTGGATTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAG 19036961 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 ||||||| || |||| ||| ||||||| || | ||||| ||||||| | Sbjct 19036962 GCTAAAT-----CCCAAGACAAGTAGGCAACAAGTACCGTAAGGGAAAGTTGAAAAGATC 19037016 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 |||| | |||||||| || || ||||||| Sbjct 19037017 TTTGAAGAGAGAGTTCAAGAGGGCGTGAAA 19037046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079998498500