Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13]
70 sequences; 2,049,536,252 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq24 145 3e-32
seq25 141 4e-31
seq66 125 3e-26
seq64 118 4e-24
seq27 111 7e-22
seq1 109 2e-21
seq36 86.0 3e-14
>seq24
Length=75875076
Score = 145 bits (160), Expect = 3e-32
Identities = 109/128 (85%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615
||| || || | |||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 40358903 AGCGTATGTGCTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGG 40358962
Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675
||||||||||||||| || |||||| ||| ||||||||||| ||||| | |||||||
Sbjct 40358963 AAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTAT 40359022
Query 676 AGGGGCGA 683
||||||||
Sbjct 40359023 AGGGGCGA 40359030
>seq25
Length=45393205
Score = 141 bits (156), Expect = 4e-31
Identities = 99/113 (88%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 41952146 GGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 41952205
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
||| || |||||| ||| ||||||||||| ||||| | |||||||||||||
Sbjct 41952206 GGCCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCTGACCTGGGTATAGGGGC 41952258
Score = 96.9 bits (106), Expect = 1e-17
Identities = 92/118 (78%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||| |
Sbjct 42711850 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAGT 42711791
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157
| |||| ||||||||||| ||||||| || | ||||| ||||||| |||||||
Sbjct 42711790 ACTGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGG 42711733
Score = 75.2 bits (82), Expect = 5e-11
Identities = 64/79 (81%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 37449647 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 37449706
Query 100 ATTGGCCAGAGACCGATAG 118
| ||| |||||||||||
Sbjct 37449707 ACCGGCACGAGACCGATAG 37449725
>seq66
Length=60305753
Score = 125 bits (138), Expect = 3e-26
Identities = 105/129 (81%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614
||||||| || | ||||| ||||| ||||||||||||||| |||| |||||| ||
Sbjct 31680553 GAGCATACGTGCTAGGACCTGAAAGGTGGTGAACTATGCCTAGGCAGGGCAAAGCCAAAG 31680612
Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674
|||||||||||||||| | |||||| ||| ||||||||||| ||||| | ||||||
Sbjct 31680613 GAAACTCTGGTGGAGGTCCATAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTA 31680672
Query 675 TAGGGGCGA 683
|||||||||
Sbjct 31680673 TAGGGGCGA 31680681
Score = 82.4 bits (90), Expect = 3e-13
Identities = 89/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 79 AAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGA 138
||| | | ||||| |||||||| ||| ||||||||||| ||||||| || | ||
Sbjct 44458421 AAACTCCATCTAAGGCTAAATACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGA 44458480
Query 139 AAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196
||| ||||||| |||||| | |||||||| || || ||||||| ||| | ||| ||
Sbjct 44458481 AAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAA 44458538
>seq64
Length=84437661
Score = 118 bits (130), Expect = 4e-24
Identities = 122/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 44915938 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 44915997
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||| ||||| ||||||| || | ||||| ||||||| |||||| |
Sbjct 44915998 ACCGGCACGAGACTGATAGTTAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 44916057
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| || || ||||||| ||| | ||| || ||
Sbjct 44916058 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 44916097
>seq27
Length=40567063
Score = 111 bits (122), Expect = 7e-22
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 30733771 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 30733712
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| |||| ||||||||||| ||||||| || | ||||| ||||||| |||||| |
Sbjct 30733711 ACTGGCATGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 30733652
Query 160 AGAGAGTTAAAAAG 173
|||||||| || ||
Sbjct 30733651 AGAGAGTTCAAGAG 30733638
>seq1
Length=270692262
Score = 109 bits (120), Expect = 2e-21
Identities = 105/135 (78%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | ||||||| || | ||||| ||||||||||||||||||| |||| |||
Sbjct 204041320 GAGCATGAGCATATGTGCTACGACCCCAAAGATGGTGAACTATGCCAAGGCAGGGCAAAG 204041379
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || || ||| ||| | | ||||||| || || |
Sbjct 204041380 CCAGAGGAAACTCTGGTGGAGGTCCGTAGTGGTCCTGACATACAAATCGGTCATCTGAAC 204041439
Query 669 TGGGTATAGGGGCGA 683
|||||||||||| ||
Sbjct 204041440 TGGGTATAGGGGTGA 204041454
Score = 102 bits (112), Expect = 3e-19
Identities = 118/158 (75%), Gaps = 1/158 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| |||| ||||||||||||| | || |||| |||||| | | ||||| ||||| |
Sbjct 204040636 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAGT 204040695
Query 100 ATTGGCCAGAGACCGAT-AGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
| | |||||||| || |||| || || | ||||| ||||||| |||||| |
Sbjct 204040696 ACCAACACAAGACCGATTAGTCAACAAATACTGTAAGGGAAAGTTGAAAAGAACTTTGAA 204040755
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196
|||||||| || || ||||||||||||| ||| ||
Sbjct 204040756 GAGAGAGTTCAAGAGGGTGTGAAATTGTTGAGAGGTAA 204040793
Score = 93.3 bits (102), Expect = 2e-16
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615
||| || || | |||||| ||||||||| ||||||||||| ||||||||||||||||
Sbjct 200672703 AGCGTATGTGCTAGGACCCAAAAGATGGTCAACTATGCCTGGGCAGGGTGAAGCCAGAGG 200672762
Query 616 AAACTCTGGTGGAGGCTCGCAGCGGT 641
||||||||||||||| | |||| ||
Sbjct 200672763 AAACTCTGGTGGAGGTCCACAGCAGT 200672788
Score = 75.2 bits (82), Expect = 5e-11
Identities = 85/114 (75%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| |||| ||||||||||||| | || || |||||| | | ||||| |||||||
Sbjct 109682168 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 109682109
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153
| || |||||| |||| ||||||| || | ||||| ||||||| |||
Sbjct 109682108 ACCAGCACGAGACCAATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACT 109682055
>seq36
Length=28007247
Score = 86.0 bits (94), Expect = 3e-14
Identities = 109/150 (73%), Gaps = 5/150 (3%)
Strand=Plus/Plus
Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92
|||| ||||| | ||| ||||||||||||| | || |||| |||||| | | |||||
Sbjct 19036902 CTTCTCCGAGTTGGATTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAG 19036961
Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152
||||||| || |||| ||| ||||||| || | ||||| ||||||| |
Sbjct 19036962 GCTAAAT-----CCCAAGACAAGTAGGCAACAAGTACCGTAAGGGAAAGTTGAAAAGATC 19037016
Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182
|||| | |||||||| || || |||||||
Sbjct 19037017 TTTGAAGAGAGAGTTCAAGAGGGCGTGAAA 19037046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079998498500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |