Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq46 176 2e-42 seq66 161 5e-38 seq27 161 5e-38 seq21 161 5e-38 seq1 158 6e-37 seq33 134 6e-30 seq36 122 4e-26 seq65 114 6e-24 >seq46 Length=143779068 Score = 176 bits (194), Expect = 2e-42 Identities = 100/102 (98%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2154671 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 2154612 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||| ||||||||||||||||||| |||||||||| Sbjct 2154611 CCGAATCCCCGTCCCGCGGTGGGGCGCGGGAAATGTGGCGTA 2154570 >seq66 Length=60305753 Score = 161 bits (178), Expect = 5e-38 Identities = 97/102 (95%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 16971637 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCAAGTGAACAGGGAAGAGCCCAGCA 16971578 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||| | ||||||||||||||||||| |||||||||| Sbjct 16971577 CCGAATCCCTGTCCCGCGGTGGGGCGCGGGAAATGTGGCGTA 16971536 Score = 118 bits (130), Expect = 5e-25 Identities = 85/98 (87%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 31679522 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGTGAGTGAACAGGGAAGAGCCCAGTG 31679581 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGG 98 | |||||||| || || || | | | ||| |||||| Sbjct 31679582 CTGAATCCCCATCCTGCAGTAGTGTGTAGGAAATGTGG 31679619 >seq27 Length=40567063 Score = 161 bits (178), Expect = 5e-38 Identities = 97/102 (95%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 30733992 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCTCAGCA 30733933 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||| |||| |||||||||||||| |||||||||| Sbjct 30733932 CCGAATCCCCGTCCCGTGGTGGGGCGCGGGAAATGTGGCGTA 30733891 >seq21 Length=203625132 Score = 161 bits (178), Expect = 5e-38 Identities = 97/102 (95%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 89200376 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACAGTGAGTGAACAGGGAAGAGCCCAGCA 89200317 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||| ||||||||||||||||||| |||||||||| Sbjct 89200316 CCGAATCCCCGTCCCGCGGTGGGGCGCGGGAAATGTGGCGTA 89200275 Score = 111 bits (122), Expect = 7e-23 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||| |||||| ||||| ||| || |||||||||| |||||||| Sbjct 126904947 GGAAAAGAAACTAACCAGGTTTCCCTTAGTAATGGCAAGCAAACAGGGAAGGGCCCAGCG 126904888 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGA 91 ||||||||| | || ||||||| | |||||| Sbjct 126904887 CCGAATCCCTGTCCTGCGGTGGAGTGCGGGA 126904857 >seq1 Length=270692262 Score = 158 bits (174), Expect = 6e-37 Identities = 92/95 (97%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 89976824 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGTCCAGCG 89976883 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATG 95 ||||||||||| ||||||||||||||||||| ||| Sbjct 89976884 CCGAATCCCCGTCCCGCGGTGGGGCGCGGGAAATG 89976918 Score = 105 bits (116), Expect = 3e-21 Identities = 85/102 (83%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||| ||| | | ||||||||||||||||||||| | Sbjct 204040439 GGAAAAGAAACTAACCAGGATTCCCTCTGTAGCAGTGAGTGAACAGGGAAGAGCCCATCA 204040498 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | ||||||| | ||| ||||| | |||| ||||||| || Sbjct 204040499 CTGAATCCCTGTCCC---ATGGGGTGTGGGAAATGTGGCATA 204040537 >seq33 Length=109106476 Score = 134 bits (148), Expect = 6e-30 Identities = 79/82 (96%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 80384304 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGAG 80384363 Query 61 CCGAATCCCCGCCCCGCGGTGG 82 ||||||||||| ||||||| || Sbjct 80384364 CCGAATCCCCGTCCCGCGGAGG 80384385 Score = 89.7 bits (98), Expect = 2e-16 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 2 GAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGC 61 ||||||||| |||||||||||||||||||||| || ||||| |||||||| ||||||| | Sbjct 42885651 GAAAAGAAATTAACCAGGATTCCCTCAGTAACAGCAAGTGAGCAGGGAAG-GCCCAGCAC 42885593 Query 62 CGAATCCCCG-CCCCGCGGTGGG 83 | |||||| | ||| |||||| Sbjct 42885592 CAAATCCCTGATCCCATGGTGGG 42885570 >seq36 Length=28007247 Score = 122 bits (134), Expect = 4e-26 Identities = 88/102 (86%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||| ||||||| | |||||||| |||| ||||||||||||||||||||||||| Sbjct 19036687 GGAAAAGAAGCTAACCAAGGTTCCCTCACTAACAGCGAGTGAACAGGGAAGAGCCCAGCA 19036746 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||| | || | |||||||| |||| ||||||| || Sbjct 19036747 CCGAATCCCTGTCCTGTGGTGGGGCATGGGAAATGTGGCATA 19036788 >seq65 Length=73173314 Score = 114 bits (126), Expect = 6e-24 Identities = 66/68 (97%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 12946582 GGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCA 12946523 Query 61 CCGAATCC 68 |||||||| Sbjct 12946522 CCGAATCC 12946515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230399848800