Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq41 246 5e-63 seq33 233 3e-59 seq66 215 8e-54 seq24 197 2e-48 seq29 192 9e-47 seq58 132 8e-29 seq1 125 1e-26 seq21 100 5e-19 >seq41 Length=19343079 Score = 246 bits (272), Expect = 5e-63 Identities = 208/252 (83%), Gaps = 14/252 (6%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 4165637 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 4165579 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| || | |||||| | |||| | |||||||||||||| | | || ||| || Sbjct 4165578 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC--TC 4165522 Query 135 GATGGGGCTATTTAGCAGGTTAAG--------GTCTCGTTCGTTATCGGAATTAACCAGA 186 | |||| | || | ||||| |||||||||||||||||||||||||||| Sbjct 4165521 G--GGGGTCACATAACTAGTTAACATACCAGAGTCTCGTTCGTTATCGGAATTAACCAGA 4165464 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 |||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 4165463 CAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGC 4165404 Query 247 TATCAATCTGTC 258 |||||||||||| Sbjct 4165403 TATCAATCTGTC 4165392 >seq33 Length=109106476 Score = 233 bits (258), Expect = 3e-59 Identities = 205/252 (81%), Gaps = 14/252 (6%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| || ||||| |||| | ||||||||||||||||||||||| ||||||| | Sbjct 49721435 GTCAGTGTAGTGCACGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTCTTATTGC-T 49721493 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| ||| | ||||| | |||| | |||||||||||||| | | || ||| || Sbjct 49721494 CAATCTTGGGT-GGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC--TC 49721550 Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | |||| ||| |||||| | | |||||||||||||||||||||||||||| Sbjct 49721551 G--GGGGTCGCATAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGA 49721608 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 |||||| ||||||||||||| || ||||||||||||||||||| |||||||||||||| | Sbjct 49721609 CAAATCGCTCCACCAACTAAAAATGGCCATGCACCACCACCCACAGAATCAAGAAAGAAC 49721668 Query 247 TATCAATCTGTC 258 |||||||||||| Sbjct 49721669 TATCAATCTGTC 49721680 Score = 187 bits (206), Expect = 4e-45 Identities = 209/275 (76%), Gaps = 22/275 (8%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 || || ||| || ||||||||||| | ||||| |||| |||||||||||||| ||||| Sbjct 88879880 ACACGCTGGGTCAGTCAGTGTAGCACACGTGCAGCCCCAGACATCTAAGGGCATTACAGA 88879939 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||| || | || ||| | |||| | || | | |||||||||||||| | | Sbjct 88879940 CCTGTTATTGC-TCCATCT-CCAGTAGCTGAATGCTACTTGTCCCTCTAAGAAGTTGGAC 88879997 Query 122 ACCAACCAT--AG---TCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175 || |||| || ||| || ||| |||||| | | ||||| ||| |||| || Sbjct 88879998 ACTGACCACTCAGGGCTCGCATAA--CTAGTTAGCATGCCAGAGTCTCATTCATTATTGG 88880055 Query 176 AATTAACCAGACAAATCAC------------TCCACCAACTAAGAACGGCCATGCACCAC 223 ||||||||||||||||| | |||||||| |||||||| |||||||||| Sbjct 88880056 AATTAACCAGACAAATCGCCAGATGAATCGCTCCACCAATTAAGAACGTCCATGCACCAT 88880115 Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||| ||||||||||||||||||||| Sbjct 88880116 CACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 88880150 >seq66 Length=60305753 Score = 215 bits (238), Expect = 8e-54 Identities = 201/252 (80%), Gaps = 14/252 (6%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | |||| |||| | |||||||||||| |||||||||||||| ||| | Sbjct 31676500 GTCAGTGTAGCATGTGTGCAGCCCTGGACATCTAAGGGCTTCACAGACCTGTTAATGC-T 31676442 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 |||||| | |||||| | |||| | ||||| ||||||| | ||| ||| || Sbjct 31676441 CAAACT-CGGGTGGCTGAACGCCACTTCTCCCTTTAAGAAGTTGGACACGGACCGC--TC 31676385 Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | |||| ||| |||||| | | ||||| || ||||||||||||||||||| Sbjct 31676384 G--GGGGTTACATAACTAGTTAGCATGCCAGAGTCTCATTTGTTATCGGAATTAACCAGA 31676327 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 31676326 CAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGC 31676267 Query 247 TATCAATCTGTC 258 || |||||| || Sbjct 31676266 TAACAATCTTTC 31676255 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||||||||||||| |||||||||||||||||| |||||||| Sbjct 29159027 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCAGAATTAACCAGACAAATCGCTCCACCA 29159086 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 29159087 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 29159143 Score = 127 bits (140), Expect = 3e-27 Identities = 162/220 (74%), Gaps = 11/220 (5%) Strand=Plus/Plus Query 47 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCC 106 ||| ||||||| ||| |||||||||| |||| || | |||||| | || | ||||| Sbjct 21036762 TAAAGGCATCATAGATCTGTTATTGC-TCAATCT-CAGGTGGCTGAATCTCACTTGTCCC 21036819 Query 107 TCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGC-------TATTTAGCAGGTTAAGG 159 ||||||||| ||||||| ||| ||| | || |||||| | Sbjct 21036820 TCTAAGAAGTTGATTGCCAACCAC--TCGGGGGGTCACAAAACTAGTTAGCATACCAGAC 21036877 Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 ||||| ||||||| |||||||||||| ||| | || |||||| ||||| |||||||| | Sbjct 21036878 TCTCGCTCGTTATTGGAATTAACCAGGCAACTTGCTGCACCAAGTAAGATCGGCCATGTA 21036937 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCC 259 ||||||||| ||||| |||||||||||| ||||||||| Sbjct 21036938 GCACCACCCACAGAATTGAGAAAGAGCTATTAATCTGTCC 21036977 Score = 98.7 bits (108), Expect = 2e-18 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| || |||| |||| | |||||||||||||||||||||||||||||| || Sbjct 57740541 GTCAGTGTAGCACGTGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 57740483 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || | |||| | |||| | ||||||| |||||| Sbjct 57740482 CAATC-TCGGGTAGCTGAATGCCACTCGTCCCTCCAAGAAG 57740443 >seq24 Length=75875076 Score = 197 bits (218), Expect = 2e-48 Identities = 197/251 (78%), Gaps = 12/251 (5%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | | ||| |||| | ||| |||||||| |||||||||||||||||| | Sbjct 57219990 GTCAGTGTAGCACACATGCAGCCCTGGACACCTAAGGGCGTCACAGACCTGTTATTGC-T 57220048 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| || | |||||| | ||| | || ||||||||||| | | || | || Sbjct 57220049 CAATCT-CGGGTGGCTGAACTCCACTTGTACCTCTAAGAAGTTGGATGCTGAC--TGCTC 57220105 Query 135 GATGGGGC-------TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | ||| | || |||||| | || ||||| ||| ||||| ||||||||||||| Sbjct 57220106 -AGGGGTCACACAACTAGTTAGCATGCCAAAGTCTCATTCATTATCAGAATTAACCAGAC 57220164 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| Sbjct 57220165 AAATCACTCCACCAACTAACAACAGCCATGCACCACCACCCACAGAATCAAGAAAGAGCT 57220224 Query 248 ATCAATCTGTC 258 |||||||| || Sbjct 57220225 ATCAATCTTTC 57220235 >seq29 Length=37982970 Score = 192 bits (212), Expect = 9e-47 Identities = 177/221 (80%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| |||| ||| |||| | ||| ||||||||||||||||||||||||||| | Sbjct 16055001 GTCAGTGTAGTGCGCATGCAGCCCTGGACACCTAAGGGCATCACAGACCTGTTATTGC-T 16055059 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| || | |||||| | |||| | |||||||||||||| | || | ||| || Sbjct 16055060 CAATCT-CAGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGACAGCGACCGC--TC 16055116 Query 135 GATGGGG------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || || ||| |||||| | | ||||| || |||||| |||||||||||||| Sbjct 16055117 GAGGGTCGCATAACTAGTTAGCATGCCAGAGTCTCATTGGTTATCAGAATTAACCAGACA 16055176 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 ||||||||||||||||||||||||||||||||||||||||| Sbjct 16055177 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 16055217 Score = 80.6 bits (88), Expect = 4e-13 Identities = 80/102 (78%), Gaps = 10/102 (10%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| || |||| |||| | |||||||||||||||||||||| ||||||| || Sbjct 31773404 GTCAGTGTAGCACGTGTGCAGCCCCGGACATCTAAGGGCATCACAGACCCGTTATTG-CT 31773462 Query 75 CAAACTTCCATTGGCTGGAA-GCCAATAGTCCCTCTAAGAAG 115 ||| || | |||| ||| | ||| |||||||||| Sbjct 31773463 CAATCT--------CGGGAACACCACTTGTCTCTCTAAGAAG 31773496 >seq58 Length=131974632 Score = 132 bits (146), Expect = 8e-29 Identities = 100/117 (85%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| ||| |||| ||||||||||||||| | |||||||| Sbjct 64136780 CTAGTTAGCATGCCAGAGTCTCATTCATTATTGGAATTAACCAGACA--TTGCTCCACCA 64136723 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| ||||||| |||||||| || |||||||||||||||||||||||||||| Sbjct 64136722 ACTAAGAATGGCCATGTACCACCACTCACAGAATCAAGAAAGAGCTATCAATCTGTC 64136666 >seq1 Length=270692262 Score = 125 bits (138), Expect = 1e-26 Identities = 156/210 (74%), Gaps = 14/210 (7%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | |||| ||| |||||||||||||||||||||||||||||| || Sbjct 82170575 GTCAGTGTAGCATGTGTGCATCCCCTGACATCTAAGGGCATCACAGACCTGTTATTG-CT 82170633 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| | || |||||| | |||| | ||||||||||||| | | || | || Sbjct 82170634 CAATC-TCGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAATTGGACTGTGAC--TGCTC 82170690 Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | |||| ||| |||||| | | | |||||| ||||| ||||||||||||| Sbjct 82170691 G--GGGGCCGCATAACTAGTTAGCATGCCAGAGCCTCGTTTGTTATTGGAATTAACCAGA 82170748 Query 187 CAAATCACTCCACCAACTAAGAACGGCCAT 216 ||||| |||||| |||||||||| ||||| Sbjct 82170749 CAAATTGCTCCACTAACTAAGAACAGCCAT 82170778 Score = 122 bits (134), Expect = 1e-25 Identities = 87/99 (88%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| |||| ||||| |||||||||||||||||| |||||||||||||||| ||||| || Sbjct 118550811 GTCTTGTTCATTATCAGAATTAACCAGACAAATCGCTCCACCAACTAAGAATGGCCACGC 118550752 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 |||||| |||| ||||| ||| ||||||||| |||||| Sbjct 118550751 ACCACCCCCCACAGAATTGAGAGAGAGCTATC-ATCTGT 118550714 >seq21 Length=203625132 Score = 100 bits (110), Expect = 5e-19 Identities = 85/102 (83%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| || Sbjct 158432008 GTCAGTGTAACGCGCGTGCAGCCCCAGTCATCTAAGGGCATCACAGACCTGTTATTG-CT 158431950 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 | | ||| |||||| | |||| | ||||||||||||||| Sbjct 158431949 CGATCTT-GGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGC 158431909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796799459670