Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13]
70 sequences; 2,049,536,252 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq41 246 5e-63
seq33 233 3e-59
seq66 215 8e-54
seq24 197 2e-48
seq29 192 9e-47
seq58 132 8e-29
seq1 125 1e-26
seq21 100 5e-19
>seq41
Length=19343079
Score = 246 bits (272), Expect = 5e-63
Identities = 208/252 (83%), Gaps = 14/252 (6%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |
Sbjct 4165637 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 4165579
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134
||| || | |||||| | |||| | |||||||||||||| | | || ||| ||
Sbjct 4165578 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC--TC 4165522
Query 135 GATGGGGCTATTTAGCAGGTTAAG--------GTCTCGTTCGTTATCGGAATTAACCAGA 186
| |||| | || | ||||| ||||||||||||||||||||||||||||
Sbjct 4165521 G--GGGGTCACATAACTAGTTAACATACCAGAGTCTCGTTCGTTATCGGAATTAACCAGA 4165464
Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246
|||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 4165463 CAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGC 4165404
Query 247 TATCAATCTGTC 258
||||||||||||
Sbjct 4165403 TATCAATCTGTC 4165392
>seq33
Length=109106476
Score = 233 bits (258), Expect = 3e-59
Identities = 205/252 (81%), Gaps = 14/252 (6%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||||||| || ||||| |||| | ||||||||||||||||||||||| ||||||| |
Sbjct 49721435 GTCAGTGTAGTGCACGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTCTTATTGC-T 49721493
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134
||| ||| | ||||| | |||| | |||||||||||||| | | || ||| ||
Sbjct 49721494 CAATCTTGGGT-GGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC--TC 49721550
Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186
| |||| ||| |||||| | | ||||||||||||||||||||||||||||
Sbjct 49721551 G--GGGGTCGCATAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGA 49721608
Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246
|||||| ||||||||||||| || ||||||||||||||||||| |||||||||||||| |
Sbjct 49721609 CAAATCGCTCCACCAACTAAAAATGGCCATGCACCACCACCCACAGAATCAAGAAAGAAC 49721668
Query 247 TATCAATCTGTC 258
||||||||||||
Sbjct 49721669 TATCAATCTGTC 49721680
Score = 187 bits (206), Expect = 4e-45
Identities = 209/275 (76%), Gaps = 22/275 (8%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
|| || ||| || ||||||||||| | ||||| |||| |||||||||||||| |||||
Sbjct 88879880 ACACGCTGGGTCAGTCAGTGTAGCACACGTGCAGCCCCAGACATCTAAGGGCATTACAGA 88879939
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
||||||||||| || | || ||| | |||| | || | | |||||||||||||| | |
Sbjct 88879940 CCTGTTATTGC-TCCATCT-CCAGTAGCTGAATGCTACTTGTCCCTCTAAGAAGTTGGAC 88879997
Query 122 ACCAACCAT--AG---TCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175
|| |||| || ||| || ||| |||||| | | ||||| ||| |||| ||
Sbjct 88879998 ACTGACCACTCAGGGCTCGCATAA--CTAGTTAGCATGCCAGAGTCTCATTCATTATTGG 88880055
Query 176 AATTAACCAGACAAATCAC------------TCCACCAACTAAGAACGGCCATGCACCAC 223
||||||||||||||||| | |||||||| |||||||| ||||||||||
Sbjct 88880056 AATTAACCAGACAAATCGCCAGATGAATCGCTCCACCAATTAAGAACGTCCATGCACCAT 88880115
Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||| |||||| |||||||||||||||||||||
Sbjct 88880116 CACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 88880150
>seq66
Length=60305753
Score = 215 bits (238), Expect = 8e-54
Identities = 201/252 (80%), Gaps = 14/252 (6%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||| | |||| |||| | |||||||||||| |||||||||||||| ||| |
Sbjct 31676500 GTCAGTGTAGCATGTGTGCAGCCCTGGACATCTAAGGGCTTCACAGACCTGTTAATGC-T 31676442
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134
|||||| | |||||| | |||| | ||||| ||||||| | ||| ||| ||
Sbjct 31676441 CAAACT-CGGGTGGCTGAACGCCACTTCTCCCTTTAAGAAGTTGGACACGGACCGC--TC 31676385
Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186
| |||| ||| |||||| | | ||||| || |||||||||||||||||||
Sbjct 31676384 G--GGGGTTACATAACTAGTTAGCATGCCAGAGTCTCATTTGTTATCGGAATTAACCAGA 31676327
Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 31676326 CAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGC 31676267
Query 247 TATCAATCTGTC 258
|| |||||| ||
Sbjct 31676266 TAACAATCTTTC 31676255
Score = 167 bits (184), Expect = 4e-39
Identities = 107/117 (91%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | ||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 29159027 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCAGAATTAACCAGACAAATCGCTCCACCA 29159086
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 29159087 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 29159143
Score = 127 bits (140), Expect = 3e-27
Identities = 162/220 (74%), Gaps = 11/220 (5%)
Strand=Plus/Plus
Query 47 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCC 106
||| ||||||| ||| |||||||||| |||| || | |||||| | || | |||||
Sbjct 21036762 TAAAGGCATCATAGATCTGTTATTGC-TCAATCT-CAGGTGGCTGAATCTCACTTGTCCC 21036819
Query 107 TCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGC-------TATTTAGCAGGTTAAGG 159
||||||||| ||||||| ||| ||| | || |||||| |
Sbjct 21036820 TCTAAGAAGTTGATTGCCAACCAC--TCGGGGGGTCACAAAACTAGTTAGCATACCAGAC 21036877
Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219
||||| ||||||| |||||||||||| ||| | || |||||| ||||| |||||||| |
Sbjct 21036878 TCTCGCTCGTTATTGGAATTAACCAGGCAACTTGCTGCACCAAGTAAGATCGGCCATGTA 21036937
Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCC 259
||||||||| ||||| |||||||||||| |||||||||
Sbjct 21036938 GCACCACCCACAGAATTGAGAAAGAGCTATTAATCTGTCC 21036977
Score = 98.7 bits (108), Expect = 2e-18
Identities = 84/101 (83%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||| || |||| |||| | |||||||||||||||||||||||||||||| ||
Sbjct 57740541 GTCAGTGTAGCACGTGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 57740483
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
||| | || | |||| | |||| | ||||||| ||||||
Sbjct 57740482 CAATC-TCGGGTAGCTGAATGCCACTCGTCCCTCCAAGAAG 57740443
>seq24
Length=75875076
Score = 197 bits (218), Expect = 2e-48
Identities = 197/251 (78%), Gaps = 12/251 (5%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||| | | ||| |||| | ||| |||||||| |||||||||||||||||| |
Sbjct 57219990 GTCAGTGTAGCACACATGCAGCCCTGGACACCTAAGGGCGTCACAGACCTGTTATTGC-T 57220048
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134
||| || | |||||| | ||| | || ||||||||||| | | || | ||
Sbjct 57220049 CAATCT-CGGGTGGCTGAACTCCACTTGTACCTCTAAGAAGTTGGATGCTGAC--TGCTC 57220105
Query 135 GATGGGGC-------TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| ||| | || |||||| | || ||||| ||| ||||| |||||||||||||
Sbjct 57220106 -AGGGGTCACACAACTAGTTAGCATGCCAAAGTCTCATTCATTATCAGAATTAACCAGAC 57220164
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||
Sbjct 57220165 AAATCACTCCACCAACTAACAACAGCCATGCACCACCACCCACAGAATCAAGAAAGAGCT 57220224
Query 248 ATCAATCTGTC 258
|||||||| ||
Sbjct 57220225 ATCAATCTTTC 57220235
>seq29
Length=37982970
Score = 192 bits (212), Expect = 9e-47
Identities = 177/221 (80%), Gaps = 10/221 (5%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||||||| |||| ||| |||| | ||| ||||||||||||||||||||||||||| |
Sbjct 16055001 GTCAGTGTAGTGCGCATGCAGCCCTGGACACCTAAGGGCATCACAGACCTGTTATTGC-T 16055059
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134
||| || | |||||| | |||| | |||||||||||||| | || | ||| ||
Sbjct 16055060 CAATCT-CAGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGACAGCGACCGC--TC 16055116
Query 135 GATGGGG------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188
|| || ||| |||||| | | ||||| || |||||| ||||||||||||||
Sbjct 16055117 GAGGGTCGCATAACTAGTTAGCATGCCAGAGTCTCATTGGTTATCAGAATTAACCAGACA 16055176
Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229
|||||||||||||||||||||||||||||||||||||||||
Sbjct 16055177 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 16055217
Score = 80.6 bits (88), Expect = 4e-13
Identities = 80/102 (78%), Gaps = 10/102 (10%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||| || |||| |||| | |||||||||||||||||||||| ||||||| ||
Sbjct 31773404 GTCAGTGTAGCACGTGTGCAGCCCCGGACATCTAAGGGCATCACAGACCCGTTATTG-CT 31773462
Query 75 CAAACTTCCATTGGCTGGAA-GCCAATAGTCCCTCTAAGAAG 115
||| || | |||| ||| | ||| ||||||||||
Sbjct 31773463 CAATCT--------CGGGAACACCACTTGTCTCTCTAAGAAG 31773496
>seq58
Length=131974632
Score = 132 bits (146), Expect = 8e-29
Identities = 100/117 (85%), Gaps = 2/117 (2%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | ||||| ||| |||| ||||||||||||||| | ||||||||
Sbjct 64136780 CTAGTTAGCATGCCAGAGTCTCATTCATTATTGGAATTAACCAGACA--TTGCTCCACCA 64136723
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||| ||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 64136722 ACTAAGAATGGCCATGTACCACCACTCACAGAATCAAGAAAGAGCTATCAATCTGTC 64136666
>seq1
Length=270692262
Score = 125 bits (138), Expect = 1e-26
Identities = 156/210 (74%), Gaps = 14/210 (7%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||| | |||| ||| |||||||||||||||||||||||||||||| ||
Sbjct 82170575 GTCAGTGTAGCATGTGTGCATCCCCTGACATCTAAGGGCATCACAGACCTGTTATTG-CT 82170633
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134
||| | || |||||| | |||| | ||||||||||||| | | || | ||
Sbjct 82170634 CAATC-TCGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAATTGGACTGTGAC--TGCTC 82170690
Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186
| |||| ||| |||||| | | | |||||| ||||| |||||||||||||
Sbjct 82170691 G--GGGGCCGCATAACTAGTTAGCATGCCAGAGCCTCGTTTGTTATTGGAATTAACCAGA 82170748
Query 187 CAAATCACTCCACCAACTAAGAACGGCCAT 216
||||| |||||| |||||||||| |||||
Sbjct 82170749 CAAATTGCTCCACTAACTAAGAACAGCCAT 82170778
Score = 122 bits (134), Expect = 1e-25
Identities = 87/99 (88%), Gaps = 1/99 (1%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
|||| |||| ||||| |||||||||||||||||| |||||||||||||||| ||||| ||
Sbjct 118550811 GTCTTGTTCATTATCAGAATTAACCAGACAAATCGCTCCACCAACTAAGAATGGCCACGC 118550752
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257
|||||| |||| ||||| ||| ||||||||| ||||||
Sbjct 118550751 ACCACCCCCCACAGAATTGAGAGAGAGCTATC-ATCTGT 118550714
>seq21
Length=203625132
Score = 100 bits (110), Expect = 5e-19
Identities = 85/102 (83%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| ||
Sbjct 158432008 GTCAGTGTAACGCGCGTGCAGCCCCAGTCATCTAAGGGCATCACAGACCTGTTATTG-CT 158431950
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116
| | ||| |||||| | |||| | |||||||||||||||
Sbjct 158431949 CGATCTT-GGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGC 158431909
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796799459670
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