Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq47 86.0 4e-15 seq33 86.0 4e-15 seq21 86.0 4e-15 seq63 82.4 5e-14 seq41 78.8 6e-13 >seq47 Length=18085138 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 414931 CTCACTAAGCCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 414988 Query 109 TAATACAACGCAAGCT 124 |||| ||||| |||| Sbjct 414989 TAAT-CAACGTGAGCT 415003 >seq33 Length=109106476 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 49721237 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 49721294 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 49721295 TAAT-CAACGCGAGCT 49721309 >seq21 Length=203625132 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 158432206 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 158432149 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 158432148 TAAT-CAACGCGAGCT 158432134 >seq63 Length=80678228 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || || |||||| ||||||||||| ||||||||||||||||||| Sbjct 23827262 CTCACTAAACCATC-CAATCCGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 23827205 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 23827204 TAAT-CAACGCGAGCT 23827190 >seq41 Length=19343079 Score = 78.8 bits (86), Expect = 6e-13 Identities = 61/69 (88%), Gaps = 3/69 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 4165834 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 4165777 Query 109 TAATACAAC 117 |||| |||| Sbjct 4165776 TAAT-CAAC 4165769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300799802600