Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13]
70 sequences; 2,049,536,252 total letters
Query= AAMG01001634.1
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 2e-21
seq41 105 8e-21
seq29 98.7 1e-18
seq33 96.9 4e-18
seq66 95.1 1e-17
seq64 82.4 9e-14
seq27 82.4 9e-14
>seq1
Length=270692262
Score = 107 bits (118), Expect = 2e-21
Identities = 145/193 (75%), Gaps = 7/193 (4%)
Strand=Plus/Plus
Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69
||||||||||||||| || | ||||||||| |||||||| ||| |||||| ||||
Sbjct 197683030 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCG 197683088
Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128
||||||||||||||||||||||||| |||| ||||| | || || | | ||||
Sbjct 197683089 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 197683148
Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183
|| | ||| |||| | ||| | || ||||| | |||||||| | |||||| ||| ||
Sbjct 197683149 TCAGTTAAGAGCATCAAGGGAGCGCCGAGAGGCAGGGGCTGGGACAGGCAGTAGCTCACC 197683208
Query 184 GTGAGGCGGACCA 196
| ||||||||
Sbjct 197683209 TCGCAGCGGACCA 197683221
>seq41
Length=19343079
Score = 105 bits (116), Expect = 8e-21
Identities = 144/192 (75%), Gaps = 7/192 (4%)
Strand=Plus/Minus
Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69
||||||||||||||| | | ||||||||| |||||||| ||| | |||||| ||||
Sbjct 4165000 AAACCAACAAAATAGAACAGGA-GTCCTATTCCATTATTCCTAGCTGAAGTATTCCGGCG 4164942
Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128
||||||||||||||||||||||||| |||| ||||| | || || | | ||||
Sbjct 4164941 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 4164882
Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183
|| | ||| |||| | ||| | || ||||| | |||||| | | || ||| ||| ||
Sbjct 4164881 TCAGTTAAGAGCATCAAGGGAGCGCCGAGAGGCAGGGGCTGAGACAGGCGGTAGCTCACC 4164822
Query 184 GTGAGGCGGACC 195
|| ||||||||
Sbjct 4164821 TTGCGGCGGACC 4164810
>seq29
Length=37982970
Score = 98.7 bits (108), Expect = 1e-18
Identities = 143/193 (74%), Gaps = 7/193 (4%)
Strand=Plus/Plus
Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69
||||||||||||||| || | ||||||||| |||||||| ||| |||||| ||||
Sbjct 31773925 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCG 31773983
Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128
|||||||||||||| |||||||||| ||| ||||| | ||| | | | ||||
Sbjct 31773984 ACCAGCCTGCTTTGAACGCTCTAATTTTTTCAGAGTAAACGCTTTGGACCTGCAGGACAC 31774043
Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183
|| | ||| |||| | ||| |||| ||||| | ||||| || | || ||| ||| ||
Sbjct 31774044 TCAGTTAAGAGCATCAAGGGAGCACCGAGAGGCAGGGGCTAGGACAGGCTGTAGCTCACC 31774103
Query 184 GTGAGGCGGACCA 196
|| || ||||||
Sbjct 31774104 TTGCGGTGGACCA 31774116
>seq33
Length=109106476
Score = 96.9 bits (106), Expect = 4e-18
Identities = 124/163 (76%), Gaps = 6/163 (4%)
Strand=Plus/Plus
Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69
||||||||||||||| || | ||||||||| |||||||| || |||||| ||||
Sbjct 49722050 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAACTGGAGTATTCCGGCG 49722108
Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128
|||||||| |||||||||||||||| |||| ||||||| || || | | ||||
Sbjct 49722109 ACCAGCCTGCTCTGAACACTCTAATTTTTTCAAAGTAAAAGCTTCGGACCCCCAGGACAC 49722168
Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGG 167
|| | ||| |||| | ||| |||| ||||| | ||||||||
Sbjct 49722169 TCAGTTAAGAGCATCAAGGGAGCACCGAGAGGCAGGGGCTGGG 49722211
>seq66
Length=60305753
Score = 95.1 bits (104), Expect = 1e-17
Identities = 143/193 (74%), Gaps = 8/193 (4%)
Strand=Plus/Plus
Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69
||||||||||||||| || | ||||||||| |||||||| ||| |||||| |||
Sbjct 29159535 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCA 29159593
Query 70 -TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128
| |||||||||||||||| |||||||| |||| ||||| | | || | | ||||
Sbjct 29159594 ATCAGCCTGCTTTGAACAC-CTAATTTTTTCAAAGTAAACGCTTCAGACCCCCAGGACAC 29159652
Query 129 -CAATGAA-GGCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183
|| | || |||| | ||| |||||||||| | |||||| | | || ||| ||||||
Sbjct 29159653 TCAGTTAATAGCATCAAGGGAGCACCAAGAGGCAGGGGCTGAGACAGGCGGTAGCTCGCC 29159712
Query 184 GTGAGGCGGACCA 196
|||||||||
Sbjct 29159713 TCATGGCGGACCA 29159725
>seq64
Length=84437661
Score = 82.4 bits (90), Expect = 9e-14
Identities = 78/97 (80%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 12 ACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTA 71
|||||||||| || || | | ||||||| |||||||| ||| |||||| ||||
Sbjct 77118641 ACCAACAAAACAGAACCGGA-GCCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCGAC 77118699
Query 72 -AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107
||||||||||||||||||||||||| |||| |||||
Sbjct 77118700 CAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 77118736
Score = 80.6 bits (88), Expect = 3e-13
Identities = 71/86 (83%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69
||||||||||||||| || | ||||||||| |||||||| ||| |||||| ||||
Sbjct 20840396 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCG 20840454
Query 70 TA-AGCCTGCTTTGAACACTCTAATT 94
|||||||||||||||||||||||
Sbjct 20840455 ACCAGCCTGCTTTGAACACTCTAATT 20840480
>seq27
Length=40567063
Score = 82.4 bits (90), Expect = 9e-14
Identities = 81/101 (80%), Gaps = 4/101 (4%)
Strand=Plus/Minus
Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69
||||||||||||||| || | ||||||||| |||||||| |||| |||||| |||
Sbjct 12945330 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTTGCTGGAGTATTCCAGCG 12945272
Query 70 TA-AGCCTGCTTTGAACA--CTCTAATTTTCTCAAGGTAAA 107
| ||||||||||||| |||||||||| |||| |||||
Sbjct 12945271 ACCAACCTGCTTTGAACACTCTCTAATTTTTTCAAAGTAAA 12945231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595199596380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |