Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-21 seq41 105 8e-21 seq29 98.7 1e-18 seq33 96.9 4e-18 seq66 95.1 1e-17 seq64 82.4 9e-14 seq27 82.4 9e-14 >seq1 Length=270692262 Score = 107 bits (118), Expect = 2e-21 Identities = 145/193 (75%), Gaps = 7/193 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 197683030 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCG 197683088 Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 ||||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 197683089 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 197683148 Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183 || | ||| |||| | ||| | || ||||| | |||||||| | |||||| ||| || Sbjct 197683149 TCAGTTAAGAGCATCAAGGGAGCGCCGAGAGGCAGGGGCTGGGACAGGCAGTAGCTCACC 197683208 Query 184 GTGAGGCGGACCA 196 | |||||||| Sbjct 197683209 TCGCAGCGGACCA 197683221 >seq41 Length=19343079 Score = 105 bits (116), Expect = 8e-21 Identities = 144/192 (75%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| | | ||||||||| |||||||| ||| | |||||| |||| Sbjct 4165000 AAACCAACAAAATAGAACAGGA-GTCCTATTCCATTATTCCTAGCTGAAGTATTCCGGCG 4164942 Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 ||||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 4164941 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 4164882 Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183 || | ||| |||| | ||| | || ||||| | |||||| | | || ||| ||| || Sbjct 4164881 TCAGTTAAGAGCATCAAGGGAGCGCCGAGAGGCAGGGGCTGAGACAGGCGGTAGCTCACC 4164822 Query 184 GTGAGGCGGACC 195 || |||||||| Sbjct 4164821 TTGCGGCGGACC 4164810 >seq29 Length=37982970 Score = 98.7 bits (108), Expect = 1e-18 Identities = 143/193 (74%), Gaps = 7/193 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 31773925 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCG 31773983 Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 |||||||||||||| |||||||||| ||| ||||| | ||| | | | |||| Sbjct 31773984 ACCAGCCTGCTTTGAACGCTCTAATTTTTTCAGAGTAAACGCTTTGGACCTGCAGGACAC 31774043 Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183 || | ||| |||| | ||| |||| ||||| | ||||| || | || ||| ||| || Sbjct 31774044 TCAGTTAAGAGCATCAAGGGAGCACCGAGAGGCAGGGGCTAGGACAGGCTGTAGCTCACC 31774103 Query 184 GTGAGGCGGACCA 196 || || |||||| Sbjct 31774104 TTGCGGTGGACCA 31774116 >seq33 Length=109106476 Score = 96.9 bits (106), Expect = 4e-18 Identities = 124/163 (76%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| || |||||| |||| Sbjct 49722050 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAACTGGAGTATTCCGGCG 49722108 Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 |||||||| |||||||||||||||| |||| ||||||| || || | | |||| Sbjct 49722109 ACCAGCCTGCTCTGAACACTCTAATTTTTTCAAAGTAAAAGCTTCGGACCCCCAGGACAC 49722168 Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGG 167 || | ||| |||| | ||| |||| ||||| | |||||||| Sbjct 49722169 TCAGTTAAGAGCATCAAGGGAGCACCGAGAGGCAGGGGCTGGG 49722211 >seq66 Length=60305753 Score = 95.1 bits (104), Expect = 1e-17 Identities = 143/193 (74%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| ||| Sbjct 29159535 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCA 29159593 Query 70 -TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 | |||||||||||||||| |||||||| |||| ||||| | | || | | |||| Sbjct 29159594 ATCAGCCTGCTTTGAACAC-CTAATTTTTTCAAAGTAAACGCTTCAGACCCCCAGGACAC 29159652 Query 129 -CAATGAA-GGCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183 || | || |||| | ||| |||||||||| | |||||| | | || ||| |||||| Sbjct 29159653 TCAGTTAATAGCATCAAGGGAGCACCAAGAGGCAGGGGCTGAGACAGGCGGTAGCTCGCC 29159712 Query 184 GTGAGGCGGACCA 196 ||||||||| Sbjct 29159713 TCATGGCGGACCA 29159725 >seq64 Length=84437661 Score = 82.4 bits (90), Expect = 9e-14 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 12 ACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTA 71 |||||||||| || || | | ||||||| |||||||| ||| |||||| |||| Sbjct 77118641 ACCAACAAAACAGAACCGGA-GCCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCGAC 77118699 Query 72 -AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 ||||||||||||||||||||||||| |||| ||||| Sbjct 77118700 CAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 77118736 Score = 80.6 bits (88), Expect = 3e-13 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 20840396 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCG 20840454 Query 70 TA-AGCCTGCTTTGAACACTCTAATT 94 ||||||||||||||||||||||| Sbjct 20840455 ACCAGCCTGCTTTGAACACTCTAATT 20840480 >seq27 Length=40567063 Score = 82.4 bits (90), Expect = 9e-14 Identities = 81/101 (80%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| |||| |||||| ||| Sbjct 12945330 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTTGCTGGAGTATTCCAGCG 12945272 Query 70 TA-AGCCTGCTTTGAACA--CTCTAATTTTCTCAAGGTAAA 107 | ||||||||||||| |||||||||| |||| ||||| Sbjct 12945271 ACCAACCTGCTTTGAACACTCTCTAATTTTTTCAAAGTAAA 12945231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595199596380