Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13]
70 sequences; 2,049,536,252 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq41 105 7e-21
seq1 105 7e-21
seq29 102 8e-20
seq27 98.7 1e-18
seq33 93.3 4e-17
seq66 91.5 2e-16
seq64 82.4 8e-14
seq35 77.0 3e-12
>seq41
Length=19343079
Score = 105 bits (116), Expect = 7e-21
Identities = 130/174 (75%), Gaps = 3/174 (2%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71
||||||||||||||||||||| ||||||||||||| | || |||||| | | | ||
Sbjct 4164903 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTTCAGCTAGG 4164962
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131
|||||| ||||||||| | | |||||||||||| ||||| | ||| | | | |||||
Sbjct 4164963 AATAATGGAATAGGAC-TCCTGTTCTATTTTGTTGGTTT-TCGGAACTCGGGCCATGATT 4165020
Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
|| | ||| | ||||| | ||||| | | ||||||||||||||||
Sbjct 4165021 AAGAGGGACGGCCGGGGACATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 4165074
>seq1
Length=270692262
Score = 105 bits (116), Expect = 7e-21
Identities = 130/174 (75%), Gaps = 3/174 (2%)
Strand=Plus/Minus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71
||||||||||||||||||||| ||||||||||||| | || |||||| | | ||
Sbjct 197683127 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 197683068
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131
|||||| ||||||||| | |||||||||||||| ||||| | ||| | | |||||
Sbjct 197683067 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 197683010
Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
|| | ||| | |||||| | ||||| | | ||||||||||||||||
Sbjct 197683009 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 197682956
>seq29
Length=37982970
Score = 102 bits (112), Expect = 8e-20
Identities = 132/177 (75%), Gaps = 9/177 (5%)
Strand=Plus/Minus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71
|||||| |||||||||||||||||||||||||||| | || |||||| | | ||
Sbjct 31774022 TTTACTCTGAAAAAATTAGAGCGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 31773963
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131
|||||| ||||||||| | |||||||||||||| ||||| | ||| | | |||||
Sbjct 31773962 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 31773905
Query 132 AATACGGATAGTCGGGGGTGTCAGTATT---CAATTGTCAAAGGTGAAATTCTTGGA 185
|| | ||| || ||||| | ||||| | | | | ||||||||||||||||
Sbjct 31773904 AAGAGGGACAGCTGGGGGCATTCGTATTGTGCCACT---AGAGGTGAAATTCTTGGA 31773851
Score = 73.4 bits (80), Expect = 4e-11
Identities = 123/174 (71%), Gaps = 3/174 (2%)
Strand=Plus/Minus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCG-AATACATTACCATGG 71
|||||||| ||||||| |||| |||||||||||| | || ||||| | | ||
Sbjct 16055708 TTTACTTTCAAAAAATGAGAGTATTCAAAGCAGGCTGGTCACCGAAATACTCCAGCTAGG 16055649
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131
||||| ||||||||| | ||||| |||| ||| ||||| ||| || | | |||||
Sbjct 16055648 AATAACGGAATAGGAC-TCCGGTTATATTCTGTTGGTTTTTAGAACTG-GGGCCATGATT 16055591
Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
|| | ||| | ||||| | ||||| | | ||||||||||||||||
Sbjct 16055590 AAGAGGGACGGCTGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 16055537
>seq27
Length=40567063
Score = 98.7 bits (108), Expect = 1e-18
Identities = 133/179 (74%), Gaps = 11/179 (6%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATT--AGAGCGTTCAAAGCAGG-CCTTTGCTCGAATACATTACCAT 69
||||||||||||||||| |||| |||||||||||| | ||| |||||| | ||
Sbjct 12945231 TTTACTTTGAAAAAATTAGAGAGTGTTCAAAGCAGGTTGGTCGCTGGAATACTCCAGCAA 12945290
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||
Sbjct 12945291 GGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGA 12945348
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATT---CAATTGTCAAAGGTGAAATTCTTGGA 185
| || | |||| | || ||| | ||||| | | | | ||||||||||||||||
Sbjct 12945349 TTAAGAGGGATGGCCGCGGGCATTCGTATTGTGCCACT---AGAGGTGAAATTCTTGGA 12945404
>seq33
Length=109106476
Score = 93.3 bits (102), Expect = 4e-17
Identities = 131/179 (73%), Gaps = 9/179 (5%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCAT 69
||||||||||||||||||||||| ||||| ||||||| | || |||||| |
Sbjct 49722149 CTTTTACTTTGAAAAAATTAGAGTGTTCAGAGCAGGCTGGTCGCCGGAATACTCCAGTTA 49722090
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|||||||| ||||||||| | |||||||||||||| ||||| || || | | ||||
Sbjct 49722089 GGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTTTCAGAACTG-GGGCCATGA 49722032
Query 130 TAAATACGGATAGTCGGGGG---TGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
| || | |||| | | |||| | ||| | | | | | ||||||||||||||||
Sbjct 49722031 TTAAGAGGGATGGCCAGGGGCATTCTCATTGTGC---CGCTAGAGGTGAAATTCTTGGA 49721976
>seq66
Length=60305753
Score = 91.5 bits (100), Expect = 2e-16
Identities = 82/99 (83%), Gaps = 3/99 (3%)
Strand=Plus/Minus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71
||||||||||||||||||| | ||||||||||||| |||| |||||| | | ||
Sbjct 29159631 TTTACTTTGAAAAAATTAG-GTGTTCAAAGCAGGCTGATTGCCGGAATACTCCAGCTAGG 29159573
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110
|||||| ||||||||| | |||||||||||||| |||||
Sbjct 29159572 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT 29159535
>seq64
Length=84437661
Score = 82.4 bits (90), Expect = 8e-14
Identities = 78/97 (80%), Gaps = 2/97 (2%)
Strand=Plus/Minus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71
||||||||||||||||||||| ||||||||||||| | || |||||| | | ||
Sbjct 77118736 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 77118677
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT 108
|||||| ||||||| | | ||||||| |||||| |||
Sbjct 77118676 AATAATGGAATAGGGC-TCCGGTTCTGTTTTGTTGGT 77118641
Score = 75.2 bits (82), Expect = 1e-11
Identities = 117/162 (72%), Gaps = 4/162 (2%)
Strand=Plus/Minus
Query 26 AATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGGAATAATAGAATAG 84
|||||||| ||||||||||||| | || |||||| | | |||||||| ||||||
Sbjct 20840480 AATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGGAATAATGGAATAG 20840421
Query 85 GACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTC 144
||| | |||||||||||||| ||||| | ||| | | ||||| || | ||| | |
Sbjct 20840420 GAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATTAAGAGGGACGGCC 20840363
Query 145 GGGGGTGTCAGTATTCAATTGTCAAAGGTGA-AATTCTTGGA 185
||||| | ||||| | | |||||| ||||||||||
Sbjct 20840362 GGGGGCATTCGTATTGTGCCGCTAGAGGTGAGAATTCTTGGA 20840321
>seq35
Length=18284174
Score = 77.0 bits (84), Expect = 3e-12
Identities = 117/163 (72%), Gaps = 3/163 (2%)
Strand=Plus/Plus
Query 24 AAAATTAGAGCGTTCAAAGCAGGCCTTT-GCTCGAATACATTACCATGGAATAATAGAAT 82
|||||||||| ||||||| ||||| | ||| |||||| | | |||||||| ||||
Sbjct 17738047 AAAATTAGAGTGTTCAAAACAGGCTGATCGCTGGAATACTCCAACTAGGAATAATGGAAT 17738106
Query 83 AGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAG 142
||||| | | |||||||| ||| ||||| || || | | ||||| || | |||| |
Sbjct 17738107 AGGAC-TCCAGTTCTATTGTGTTGGTTTTCAGAACTGGG-GCCATGATTAAGAGGGATGG 17738164
Query 143 TCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
||||| | ||||| | | ||||||||||||||||
Sbjct 17738165 CTGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 17738207
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511999652800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |