Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq41 105 7e-21 seq1 105 7e-21 seq29 102 8e-20 seq27 98.7 1e-18 seq33 93.3 4e-17 seq66 91.5 2e-16 seq64 82.4 8e-14 seq35 77.0 3e-12 >seq41 Length=19343079 Score = 105 bits (116), Expect = 7e-21 Identities = 130/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | || |||||| | | | || Sbjct 4164903 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTTCAGCTAGG 4164962 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | | |||||||||||| ||||| | ||| | | | ||||| Sbjct 4164963 AATAATGGAATAGGAC-TCCTGTTCTATTTTGTTGGTTT-TCGGAACTCGGGCCATGATT 4165020 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | ||||| | ||||| | | |||||||||||||||| Sbjct 4165021 AAGAGGGACGGCCGGGGACATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 4165074 >seq1 Length=270692262 Score = 105 bits (116), Expect = 7e-21 Identities = 130/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | || |||||| | | || Sbjct 197683127 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 197683068 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 197683067 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 197683010 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 197683009 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 197682956 >seq29 Length=37982970 Score = 102 bits (112), Expect = 8e-20 Identities = 132/177 (75%), Gaps = 9/177 (5%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 |||||| |||||||||||||||||||||||||||| | || |||||| | | || Sbjct 31774022 TTTACTCTGAAAAAATTAGAGCGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 31773963 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 31773962 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 31773905 Query 132 AATACGGATAGTCGGGGGTGTCAGTATT---CAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| || ||||| | ||||| | | | | |||||||||||||||| Sbjct 31773904 AAGAGGGACAGCTGGGGGCATTCGTATTGTGCCACT---AGAGGTGAAATTCTTGGA 31773851 Score = 73.4 bits (80), Expect = 4e-11 Identities = 123/174 (71%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCG-AATACATTACCATGG 71 |||||||| ||||||| |||| |||||||||||| | || ||||| | | || Sbjct 16055708 TTTACTTTCAAAAAATGAGAGTATTCAAAGCAGGCTGGTCACCGAAATACTCCAGCTAGG 16055649 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 ||||| ||||||||| | ||||| |||| ||| ||||| ||| || | | ||||| Sbjct 16055648 AATAACGGAATAGGAC-TCCGGTTATATTCTGTTGGTTTTTAGAACTG-GGGCCATGATT 16055591 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | ||||| | ||||| | | |||||||||||||||| Sbjct 16055590 AAGAGGGACGGCTGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 16055537 >seq27 Length=40567063 Score = 98.7 bits (108), Expect = 1e-18 Identities = 133/179 (74%), Gaps = 11/179 (6%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATT--AGAGCGTTCAAAGCAGG-CCTTTGCTCGAATACATTACCAT 69 ||||||||||||||||| |||| |||||||||||| | ||| |||||| | || Sbjct 12945231 TTTACTTTGAAAAAATTAGAGAGTGTTCAAAGCAGGTTGGTCGCTGGAATACTCCAGCAA 12945290 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| | |||||||||||||| ||||| | ||| | | |||| Sbjct 12945291 GGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGA 12945348 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATT---CAATTGTCAAAGGTGAAATTCTTGGA 185 | || | |||| | || ||| | ||||| | | | | |||||||||||||||| Sbjct 12945349 TTAAGAGGGATGGCCGCGGGCATTCGTATTGTGCCACT---AGAGGTGAAATTCTTGGA 12945404 >seq33 Length=109106476 Score = 93.3 bits (102), Expect = 4e-17 Identities = 131/179 (73%), Gaps = 9/179 (5%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||||| ||||| ||||||| | || |||||| | Sbjct 49722149 CTTTTACTTTGAAAAAATTAGAGTGTTCAGAGCAGGCTGGTCGCCGGAATACTCCAGTTA 49722090 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| | |||||||||||||| ||||| || || | | |||| Sbjct 49722089 GGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTTTCAGAACTG-GGGCCATGA 49722032 Query 130 TAAATACGGATAGTCGGGGG---TGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | |||| | | |||| | ||| | | | | | |||||||||||||||| Sbjct 49722031 TTAAGAGGGATGGCCAGGGGCATTCTCATTGTGC---CGCTAGAGGTGAAATTCTTGGA 49721976 >seq66 Length=60305753 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/99 (83%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||| | ||||||||||||| |||| |||||| | | || Sbjct 29159631 TTTACTTTGAAAAAATTAG-GTGTTCAAAGCAGGCTGATTGCCGGAATACTCCAGCTAGG 29159573 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||| ||||||||| | |||||||||||||| ||||| Sbjct 29159572 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT 29159535 >seq64 Length=84437661 Score = 82.4 bits (90), Expect = 8e-14 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | || |||||| | | || Sbjct 77118736 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 77118677 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT 108 |||||| ||||||| | | ||||||| |||||| ||| Sbjct 77118676 AATAATGGAATAGGGC-TCCGGTTCTGTTTTGTTGGT 77118641 Score = 75.2 bits (82), Expect = 1e-11 Identities = 117/162 (72%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 26 AATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGGAATAATAGAATAG 84 |||||||| ||||||||||||| | || |||||| | | |||||||| |||||| Sbjct 20840480 AATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGGAATAATGGAATAG 20840421 Query 85 GACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTC 144 ||| | |||||||||||||| ||||| | ||| | | ||||| || | ||| | | Sbjct 20840420 GAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATTAAGAGGGACGGCC 20840363 Query 145 GGGGGTGTCAGTATTCAATTGTCAAAGGTGA-AATTCTTGGA 185 ||||| | ||||| | | |||||| |||||||||| Sbjct 20840362 GGGGGCATTCGTATTGTGCCGCTAGAGGTGAGAATTCTTGGA 20840321 >seq35 Length=18284174 Score = 77.0 bits (84), Expect = 3e-12 Identities = 117/163 (72%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 24 AAAATTAGAGCGTTCAAAGCAGGCCTTT-GCTCGAATACATTACCATGGAATAATAGAAT 82 |||||||||| ||||||| ||||| | ||| |||||| | | |||||||| |||| Sbjct 17738047 AAAATTAGAGTGTTCAAAACAGGCTGATCGCTGGAATACTCCAACTAGGAATAATGGAAT 17738106 Query 83 AGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAG 142 ||||| | | |||||||| ||| ||||| || || | | ||||| || | |||| | Sbjct 17738107 AGGAC-TCCAGTTCTATTGTGTTGGTTTTCAGAACTGGG-GCCATGATTAAGAGGGATGG 17738164 Query 143 TCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| | ||||| | | |||||||||||||||| Sbjct 17738165 CTGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 17738207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511999652800