Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq41 190 4e-46 seq33 170 4e-40 seq21 168 1e-39 seq29 152 1e-34 seq66 138 2e-30 seq63 114 2e-23 seq1 75.2 2e-11 >seq41 Length=19343079 Score = 190 bits (210), Expect = 4e-46 Identities = 200/258 (78%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 4165539 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 4165596 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | Sbjct 4165597 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGTCTAC 4165656 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| |||| ||||||| || | || | | ||||| ||||||||| | |||| Sbjct 4165657 CCTACGCCGACAGGTGTGGGTAACCTGTTGAACCCCATTCGTGGTGGGGATAG-GGATTG 4165715 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| | |||||| ||| ||||| ||| | ||||||| Sbjct 4165716 CAATTATGCCCCATGAACGAGGAATTCTCAGTAAGTGCGGGTCATAAGCTCATGTTGATT 4165775 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 4165776 AAGTCCCTGCCCTTTGTA 4165793 >seq33 Length=109106476 Score = 170 bits (188), Expect = 4e-40 Identities = 195/258 (76%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | ||| ||||| |||||| ||||||||| Sbjct 49721533 CTTCTTAGAGGGACAAGTGGCATTCAGCC-ACCCAAGATTGAG-CAATAAGAGGTCTGTG 49721476 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||| || |||||||||| | || || || | Sbjct 49721475 ATGCCCTTAGATGTCCGGGGCTGCACGTGCACTACACTGACTGGCTCAGCGTGTGTCTAC 49721416 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || |||| |||||| | | || | | || || ||||||| | | ||| Sbjct 49721415 CCTACACCAACAGGTGCGGGTAACCCGTTGAACCCCATTCATGATGGGGATCGGGGGTTG 49721356 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| |||||||||| Sbjct 49721355 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT 49721296 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 49721295 AAGTCCCTGCCCTTTGTA 49721278 Score = 161 bits (178), Expect = 2e-37 Identities = 195/259 (75%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | || | ||| |||| | | ||| ||||||||||||||| Sbjct 88879991 CTTCTTAGAGGGACAAGTAGCATTCAGCTACTGGA-GATGGAG-CAATAACAGGTCTGTA 88879934 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| |||| ||||| | ||||||||||| || ||| || || | Sbjct 88879933 ATGCCCTTAGATGTCTGGGGCTGCACGTGTGCTACACTGACTGACCCAGCGTGTGTCTGC 88879874 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTC-GTGCTGGGGATAGAGCATT 249 ||| || | || | ||||||| | || ||| |||| ||| || |||| | | ||| Sbjct 88879873 CCTATGCTGACAGTTGTGGGTAACCCA-TTGAACCCTGTTTGTGATGTGGATCGGGGATT 88879815 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | ||||||| | | | || ||||||| ||||||||| ||| ||||| ||| | |||||| Sbjct 88879814 GTAATTATTCCCCATGAATGAGGAATTCCTAGTAAGTGCGGGTCATAAGCTCATGTTGAT 88879755 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 88879754 TAAGTCCCTGCCCTTTGTA 88879736 >seq21 Length=203625132 Score = 168 bits (186), Expect = 1e-39 Identities = 195/259 (75%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| | ||| | |||| | ||| | ||| ||||||||||||||| Sbjct 158431909 GCTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACCCAAGATCGAG-CAATAACAGGTCTGT 158431966 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||||||| |||| ||||||||| ||||||||| | || || || | Sbjct 158431967 GATGCCCTTAGATGACTGGGGCTGCACGCGCGTTACACTGACTGGCTCAGCGTGTGTCTA 158432026 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| ||| || | ||||||| | | | || | ||||| ||||||| | ||| Sbjct 158432027 CCCTACGCCAACAGATGTGGGTAACCCTTTGAACACCATTCGTGATGGGGATCAGGGATT 158432086 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | || ||||||| || || ||| ||| ||||| ||| ||||||||| Sbjct 158432087 GCAATTATTCCCCATGAATGAGGAATTCCCAGGAAGTGCGGGTCATAAGCTCGCGTTGAT 158432146 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 158432147 TAAGTCCCTGCCCTTTGTA 158432165 Score = 73.4 bits (80), Expect = 7e-11 Identities = 55/65 (85%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||||||||||| | | | |||||||||| || |||||| ||| ||||| ||| |||||| Sbjct 56490577 ATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTT 56490518 Query 307 GATTA 311 ||||| Sbjct 56490517 GATTA 56490513 >seq29 Length=37982970 Score = 152 bits (168), Expect = 1e-34 Identities = 172/228 (75%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||| |||||||||||||||||||||| | |||| |||| || ||||| Sbjct 31773468 AGATTGAG-CAATAACGGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACACGTGCTAC 31773410 Query 166 ACTGACAGAGCCAACGAGT-----TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTT 220 |||||| | || || || || | ||| || | |||| ||||||| || | Sbjct 31773409 ACTGACTGGCTCAGCGTGTGTGTGTCTAC-CCTACGCTGACAGGTGTGGGTAACCTGTTG 31773351 Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280 || | | ||||| ||||||| | | |||||||||||| | | | |||||||||| || | Sbjct 31773350 AACCCCATTCGTGATGGGGATTGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCA 31773291 Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| || ||||| || | | ||||||| ||||| |||||||||| Sbjct 31773290 GTAAGTGCAAGTCATAAGGTCACATTGATTAAGTCCCAGCCCTTTGTA 31773243 Score = 111 bits (122), Expect = 3e-22 Identities = 169/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 16055099 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTGTG 16055042 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||| ||| | |||| ||| |||| |||||||||| | || | || | Sbjct 16055041 ATGCCCTTAGGTGTCCAGGGCTGCATGCGCACTACACTGACTGGCTCAGGGTGTGTCTAC 16054982 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || | |||| |||| | | || | | | ||| ||||||| | | ||| Sbjct 16054981 CCTATGCTGACAGGTGCAAGTAACCCATTGAACCCCATTTGTGATGGGGATTGGGGATTA 16054922 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 |||||||| | | | |||||||||| || |||||| ||| |||| ||| | |||| Sbjct 16054921 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCACAAGCTCCTGTTG 16054865 >seq66 Length=60305753 Score = 138 bits (152), Expect = 2e-30 Identities = 165/223 (74%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 |||||||| || |||||||||||||| |||||||||||| | |||| |||| | ||||| Sbjct 31676436 AGTTTGAG-CATTAACAGGTCTGTGAAGCCCTTAGATGTCCAGGGCTGCACACATGCTAC 31676494 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| | || || || | ||| ||| |||| ||||||| | | || | Sbjct 31676495 ACTGACTGGCTCAGCGTGTGTCTACCCTATGCCAACAGGTGTGGGTAACCCGTTGAACCC 31676554 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | | | | ||||||| | | |||||||||||| | | | || ||||||| || |||||| Sbjct 31676555 CATTTGAGATGGGGATTGGGGATTGCAATTATTCCCCATGAAAGAGGAATTCCCAGTAAG 31676614 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| || ||||||| ||||||||| |||||| Sbjct 31676615 TACAGGTCATAAGCTTGCATTGATTAAGTCCCTGCCTTTTGTA 31676657 Score = 84.2 bits (92), Expect = 4e-14 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| |||| || ||||| Sbjct 57740477 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCAGGGCTGCACACGTGCTAC 57740535 Query 166 ACTGAC 171 |||||| Sbjct 57740536 ACTGAC 57740541 >seq63 Length=80678228 Score = 114 bits (126), Expect = 2e-23 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| |||| |||||| | | || | | ||||| ||||||| | | ||||||||| Sbjct 23827089 GCCGACAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATT 23827148 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||||| ||| Sbjct 23827149 ATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATTAAGTC 23827208 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 23827209 CCTGCCCTTTGTA 23827221 >seq1 Length=270692262 Score = 75.2 bits (82), Expect = 2e-11 Identities = 79/100 (79%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 73 TTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||| Sbjct 82170672 TTCTTAGAGGGACAAGTGGCATTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTGA 82170615 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 ||||||||||||| ||| |||| | ||||||||||| Sbjct 82170614 TGCCCTTAGATGTCAGGGGATGCACACATGCTACACTGAC 82170575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199336960