Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13]
70 sequences; 2,049,536,252 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq41 190 4e-46
seq33 170 4e-40
seq21 168 1e-39
seq29 152 1e-34
seq66 138 2e-30
seq63 114 2e-23
seq1 75.2 2e-11
>seq41
Length=19343079
Score = 190 bits (210), Expect = 4e-46
Identities = 200/258 (78%), Gaps = 4/258 (2%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 4165539 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 4165596
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||||| | || || || |
Sbjct 4165597 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGTCTAC 4165656
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| |||| |||| ||||||| || | || | | ||||| ||||||||| | ||||
Sbjct 4165657 CCTACGCCGACAGGTGTGGGTAACCTGTTGAACCCCATTCGTGGTGGGGATAG-GGATTG 4165715
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||||| | | | |||||||||| | |||||| ||| ||||| ||| | |||||||
Sbjct 4165716 CAATTATGCCCCATGAACGAGGAATTCTCAGTAAGTGCGGGTCATAAGCTCATGTTGATT 4165775
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 4165776 AAGTCCCTGCCCTTTGTA 4165793
>seq33
Length=109106476
Score = 170 bits (188), Expect = 4e-40
Identities = 195/258 (76%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | ||| ||||| |||||| |||||||||
Sbjct 49721533 CTTCTTAGAGGGACAAGTGGCATTCAGCC-ACCCAAGATTGAG-CAATAAGAGGTCTGTG 49721476
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||| || |||||||||| | || || || |
Sbjct 49721475 ATGCCCTTAGATGTCCGGGGCTGCACGTGCACTACACTGACTGGCTCAGCGTGTGTCTAC 49721416
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| || |||| |||||| | | || | | || || ||||||| | | |||
Sbjct 49721415 CCTACACCAACAGGTGCGGGTAACCCGTTGAACCCCATTCATGATGGGGATCGGGGGTTG 49721356
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||||
Sbjct 49721355 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT 49721296
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 49721295 AAGTCCCTGCCCTTTGTA 49721278
Score = 161 bits (178), Expect = 2e-37
Identities = 195/259 (75%), Gaps = 5/259 (2%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | || | ||| |||| | | ||| |||||||||||||||
Sbjct 88879991 CTTCTTAGAGGGACAAGTAGCATTCAGCTACTGGA-GATGGAG-CAATAACAGGTCTGTA 88879934
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| |||| ||||| | ||||||||||| || ||| || || |
Sbjct 88879933 ATGCCCTTAGATGTCTGGGGCTGCACGTGTGCTACACTGACTGACCCAGCGTGTGTCTGC 88879874
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTC-GTGCTGGGGATAGAGCATT 249
||| || | || | ||||||| | || ||| |||| ||| || |||| | | |||
Sbjct 88879873 CCTATGCTGACAGTTGTGGGTAACCCA-TTGAACCCTGTTTGTGATGTGGATCGGGGATT 88879815
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
| ||||||| | | | || ||||||| ||||||||| ||| ||||| ||| | ||||||
Sbjct 88879814 GTAATTATTCCCCATGAATGAGGAATTCCTAGTAAGTGCGGGTCATAAGCTCATGTTGAT 88879755
Query 310 TACGTCCCTGCCCTTTGTA 328
|| ||||||||||||||||
Sbjct 88879754 TAAGTCCCTGCCCTTTGTA 88879736
>seq21
Length=203625132
Score = 168 bits (186), Expect = 1e-39
Identities = 195/259 (75%), Gaps = 3/259 (1%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
||||||||||||||| | ||| | |||| | ||| | ||| |||||||||||||||
Sbjct 158431909 GCTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACCCAAGATCGAG-CAATAACAGGTCTGT 158431966
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
|||||||||||||| |||| ||||||||| ||||||||| | || || || |
Sbjct 158431967 GATGCCCTTAGATGACTGGGGCTGCACGCGCGTTACACTGACTGGCTCAGCGTGTGTCTA 158432026
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
||| ||| || | ||||||| | | | || | ||||| ||||||| | |||
Sbjct 158432027 CCCTACGCCAACAGATGTGGGTAACCCTTTGAACACCATTCGTGATGGGGATCAGGGATT 158432086
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
||||||||| | | | || ||||||| || || ||| ||| ||||| ||| |||||||||
Sbjct 158432087 GCAATTATTCCCCATGAATGAGGAATTCCCAGGAAGTGCGGGTCATAAGCTCGCGTTGAT 158432146
Query 310 TACGTCCCTGCCCTTTGTA 328
|| ||||||||||||||||
Sbjct 158432147 TAAGTCCCTGCCCTTTGTA 158432165
Score = 73.4 bits (80), Expect = 7e-11
Identities = 55/65 (85%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306
|||||||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||
Sbjct 56490577 ATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTT 56490518
Query 307 GATTA 311
|||||
Sbjct 56490517 GATTA 56490513
>seq29
Length=37982970
Score = 152 bits (168), Expect = 1e-34
Identities = 172/228 (75%), Gaps = 7/228 (3%)
Strand=Plus/Minus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| ||||||| |||||||||||||||||||||| | |||| |||| || |||||
Sbjct 31773468 AGATTGAG-CAATAACGGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACACGTGCTAC 31773410
Query 166 ACTGACAGAGCCAACGAGT-----TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTT 220
|||||| | || || || || | ||| || | |||| ||||||| || |
Sbjct 31773409 ACTGACTGGCTCAGCGTGTGTGTGTCTAC-CCTACGCTGACAGGTGTGGGTAACCTGTTG 31773351
Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280
|| | | ||||| ||||||| | | |||||||||||| | | | |||||||||| || |
Sbjct 31773350 AACCCCATTCGTGATGGGGATTGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCA 31773291
Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||||| || ||||| || | | ||||||| ||||| ||||||||||
Sbjct 31773290 GTAAGTGCAAGTCATAAGGTCACATTGATTAAGTCCCAGCCCTTTGTA 31773243
Score = 111 bits (122), Expect = 3e-22
Identities = 169/237 (71%), Gaps = 3/237 (1%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 16055099 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTGTG 16055042
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||| ||| | |||| ||| |||| |||||||||| | || | || |
Sbjct 16055041 ATGCCCTTAGGTGTCCAGGGCTGCATGCGCACTACACTGACTGGCTCAGGGTGTGTCTAC 16054982
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| || | |||| |||| | | || | | | ||| ||||||| | | |||
Sbjct 16054981 CCTATGCTGACAGGTGCAAGTAACCCATTGAACCCCATTTGTGATGGGGATTGGGGATTA 16054922
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307
|||||||| | | | |||||||||| || |||||| ||| |||| ||| | ||||
Sbjct 16054921 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCACAAGCTCCTGTTG 16054865
>seq66
Length=60305753
Score = 138 bits (152), Expect = 2e-30
Identities = 165/223 (74%), Gaps = 1/223 (0%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|||||||| || |||||||||||||| |||||||||||| | |||| |||| | |||||
Sbjct 31676436 AGTTTGAG-CATTAACAGGTCTGTGAAGCCCTTAGATGTCCAGGGCTGCACACATGCTAC 31676494
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
|||||| | || || || | ||| ||| |||| ||||||| | | || |
Sbjct 31676495 ACTGACTGGCTCAGCGTGTGTCTACCCTATGCCAACAGGTGTGGGTAACCCGTTGAACCC 31676554
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
| | | | ||||||| | | |||||||||||| | | | || ||||||| || ||||||
Sbjct 31676555 CATTTGAGATGGGGATTGGGGATTGCAATTATTCCCCATGAAAGAGGAATTCCCAGTAAG 31676614
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||||| ||| || ||||||| ||||||||| ||||||
Sbjct 31676615 TACAGGTCATAAGCTTGCATTGATTAAGTCCCTGCCTTTTGTA 31676657
Score = 84.2 bits (92), Expect = 4e-14
Identities = 59/66 (89%), Gaps = 1/66 (2%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||||||||||||||||||||||| | |||| |||| || |||||
Sbjct 57740477 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCAGGGCTGCACACGTGCTAC 57740535
Query 166 ACTGAC 171
||||||
Sbjct 57740536 ACTGAC 57740541
>seq63
Length=80678228
Score = 114 bits (126), Expect = 2e-23
Identities = 105/133 (79%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255
|||| |||| |||||| | | || | | ||||| ||||||| | | |||||||||
Sbjct 23827089 GCCGACAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATT 23827148
Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315
||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||||| |||
Sbjct 23827149 ATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATTAAGTC 23827208
Query 316 CCTGCCCTTTGTA 328
|||||||||||||
Sbjct 23827209 CCTGCCCTTTGTA 23827221
>seq1
Length=270692262
Score = 75.2 bits (82), Expect = 2e-11
Identities = 79/100 (79%), Gaps = 3/100 (3%)
Strand=Plus/Minus
Query 73 TTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131
||||||||||||| | ||| | |||| || | ||||| |||||||||||||||||
Sbjct 82170672 TTCTTAGAGGGACAAGTGGCATTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTGA 82170615
Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171
||||||||||||| ||| |||| | |||||||||||
Sbjct 82170614 TGCCCTTAGATGTCAGGGGATGCACACATGCTACACTGAC 82170575
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947199336960
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