Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13]
70 sequences; 2,049,536,252 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq66 104 4e-20
seq58 100 5e-19
seq25 95.1 2e-17
seq24 93.3 7e-17
seq21 77.0 5e-12
>seq66
Length=60305753
Score = 104 bits (114), Expect = 4e-20
Identities = 93/114 (82%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 32681052 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 32681109
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 32681110 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 32681163
Score = 77.0 bits (84), Expect = 5e-12
Identities = 59/70 (84%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104
|| |||| || || || || ||||||||||||| |||||||| ||||||||||||||
Sbjct 31683620 TGGCTGAGGAGCCAATGGGGCAAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAA 31683679
Query 105 GTCAGAATCC 114
||||||||||
Sbjct 31683680 GTCAGAATCC 31683689
>seq58
Length=131974632
Score = 100 bits (110), Expect = 5e-19
Identities = 91/112 (81%), Gaps = 2/112 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 53441381 GTACGAGAGGAACCGCAGG-TTCAGACTT-TTGGTGTATGTGTTTGGCTGAGGAGCCAAT 53441438
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112
| |||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 53441439 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAAT 53441490
>seq25
Length=45393205
Score = 95.1 bits (104), Expect = 2e-17
Identities = 91/114 (80%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 41955760 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 41955817
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| ||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 41955818 GGGACGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 41955871
>seq24
Length=75875076
Score = 93.3 bits (102), Expect = 7e-17
Identities = 90/113 (80%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61
|||||||||||| || | |||||| | ||||| | || | || |||| || || ||
Sbjct 40362586 TACGAGAGGAACTGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATG 40362643
Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 40362644 GGGTGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 40362696
Score = 93.3 bits (102), Expect = 7e-17
Identities = 90/113 (80%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61
|||||||||||| || | |||||| | ||||| | || | || |||| || || ||
Sbjct 40371577 TACGAGAGGAACTGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATG 40371634
Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 40371635 GGGTGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 40371687
>seq21
Length=203625132
Score = 77.0 bits (84), Expect = 5e-12
Identities = 59/70 (84%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104
|| |||| || || || |||||||||||||||| |||||||| |||||||||||||
Sbjct 202841678 TGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGAGTGAACGCCTCTAA 202841737
Query 105 GTCAGAATCC 114
||||||||||
Sbjct 202841738 GTCAGAATCC 202841747
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819199444480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |