Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq21 116 3e-21 seq1 86.0 5e-12 >seq21 Length=203625132 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| |||||||| || ||||| |||||||||| ||||| || Sbjct 200397175 GGTGTACTCCACTATTTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTG 200397234 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| || || || | |||||||||| ||| || || || ||||||||| || Sbjct 200397235 GTTGCTCTTCCGGTTACAAGAGTCCTTGTACAGCATATAAGGGGTACCGGTCTCAGTCTG 200397294 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 ||||||||||||||| | ||| || Sbjct 200397295 GGACTCAATGATGGCATACCAGAG 200397318 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| ||||||| || | ||||| |||||||| | Sbjct 200398407 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGCTCCTCCTT 200398466 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||| || || ||| || || ||||||||||| || ||||| || |||||||| Sbjct 200398467 CCCGGTGTTCTTCTTCAAATCCAGAAACTCAAAGATATCCAAGTGCCACGGCTCCAGGTA 200398526 Query 66460 GATGGCGAACGAGCCC 66475 ||||| || ||||| Sbjct 200398527 AATGGCAAA--AGCCC 200398540 >seq1 Length=270692262 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||||||||| ||||| ||||| | | || || || |||||||| || || |||| Sbjct 235941445 TGGAACGTTTTAGCCAGGAAGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGTTTTCAGA 235941386 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| || ||||| ||||| |||||||||||| | || || || || ||||||| Sbjct 235941385 TTCTCATTGAAAATGTTCACTCAGAGATGTACAGTCTGCTAATAGACACTTACATCA 235941329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567660824800