Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq45583 255 9e-66 seq14210 170 3e-40 seq70536 75.2 2e-11 >seq45583 Length=22422 Score = 255 bits (282), Expect = 9e-66 Identities = 198/232 (85%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| |||| ||||||| |||||||||||| ||| | Sbjct 17099 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCT-GATGACTTGCGCTTACTAGGCATT-C 17042 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| || |||| |||| ||||||||||||||| ||| | |||||| |||| Sbjct 17041 CTCGTTAAAGATTAATAATTACAATAATCTATCCCCATCACAATGCACATTCAAAAGATT 16982 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | | | |||||||| ||| ||| |||| || ||||| |||||||||||||| Sbjct 16981 ACCTAAGCTTACCAGCCAAGGTTATAAACTTGTTGGATGCATCATTGTAGCGCGCGTGCA 16922 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 16921 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTG 16870 >seq14210 Length=56659 Score = 170 bits (188), Expect = 3e-40 Identities = 176/225 (78%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 10 GCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAA 69 |||||||| || ||||||||||||| ||||| ||| |||||| |||||| ||||||| | Sbjct 29862 GCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-CCTCGTTCAT 29919 Query 70 GACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACC 128 | || ||||||||| | |||||||||| || ||||| | ||||||| ||| Sbjct 29920 GGGGAATAATTGCAATCCCCGATCCCCATCATGAATGGGGTTCAACGGGTTACCCGCACC 29979 Query 129 TGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAAC 188 ||||||| ||| | | || || ||| |||||||||||||||||| |||| | || Sbjct 29980 TGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC 30039 Query 189 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||||||||||||||||||||||||||| ||||| || ||||| Sbjct 30040 ATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 30083 >seq70536 Length=3138 Score = 75.2 bits (82), Expect = 2e-11 Identities = 52/58 (90%), Gaps = 1/58 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATT 58 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||| Sbjct 3019 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT 2963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 750644494620