Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq45583 131 9e-29 seq14210 104 1e-20 seq34025 71.6 8e-11 >seq45583 Length=22422 Score = 131 bits (144), Expect = 9e-29 Identities = 102/121 (84%), Gaps = 7/121 (6%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTC----AAAATGATAACATC 56 |||||||||||||||||||||||||||||||| || ||||| | || || || || Sbjct 16570 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCTGAAGGAGTCGTTTATAAAGACGACCTC 16511 Query 57 GCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCG 116 | ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 16510 ---CAATCTCTAGTCGGCATAGTTTATAGTTAAGACTACGACGGTATCTGATCGTCTTCG 16454 Query 117 A 117 | Sbjct 16453 A 16453 >seq14210 Length=56659 Score = 104 bits (114), Expect = 1e-20 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 30384 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 30443 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTC 112 |||| ||||||||||| ||||| ||| |||||||||||||||||||||| Sbjct 30444 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTC 30495 >seq34025 Length=13952 Score = 71.6 bits (78), Expect = 8e-11 Identities = 81/109 (74%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| | ||| |||| ||| |||| |||| | | Sbjct 6191 GAACCCAAAGACTTTGGTTTCCTGGAAGCTGCCCGGCGGGTCATGGGAATAAAGCCACTG 6132 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATC 109 |||| ||||||||||| ||||| ||| |||| || ||||||||||| Sbjct 6131 GATCACTAGTCGGCATCGTTTATGGTCGGAACTATGATGGTATCTGATC 6083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 277914362520