Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq45583 214 3e-53 >seq45583 Length=22422 Score = 214 bits (236), Expect = 3e-53 Identities = 203/255 (80%), Gaps = 7/255 (3%) Strand=Plus/Plus Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---CTTTGCTCGAATACA 123 ||||| ||||||||||| |||||||||||||| |||||||| | || | |||||| Sbjct 16201 CAGGATTTTTACTTTGAGAAAATTAGAGTGTTTCAAGCAGGCTAACGTT--TTGAATACT 16258 Query 124 TTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG 183 |||||||||||||| ||||||| | | ||||| || ||||||| || || Sbjct 16259 GCAGCATGGAATAATAAAATAGGATTTTAG-TTCTACGTTATTGGTTTTAAGAACTAAAT 16317 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||| |||||| ||| ||||| | ||||| || ||||||||||||||||||| Sbjct 16318 TAATGATTGATAGGGGCAGTTGGGGGCATTTGTATTTAACTGTCAGAGGTGAAATTCTTA 16377 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 ||||| || ||||| |||||||||||||| || |||| ||||||||||||||||| | Sbjct 16378 GATTTGTTAAAGACACACTACTGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AG 16436 Query 304 AACGAAAGTTAGGGG 318 ||||||||||||||| Sbjct 16437 AACGAAAGTTAGGGG 16451 Score = 141 bits (156), Expect = 2e-31 Identities = 135/170 (79%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| |||||| ||| | ||||||||||||||||||| ||||| Sbjct 9445 ATGCTCTTAACTGAGTGTCCCGGGGGTCCAAAGCGTTTACTTTGAAAAAATTAGGGTGTT 9504 Query 99 CAAAGCAGGCC-TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 ||||||||||| |||| |||||| ||| |||||||| ||||||||| | |||||| Sbjct 9505 CAAAGCAGGCCGGTTGCCGGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCCGGTTC 9563 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGG 207 |||||||||||||| || || | | |||||||| ||||| | |||| Sbjct 9564 TATTTTGTTGGTTTTCAGAACTGGGGCCATGATTAAGAGGGACGGCCGGG 9613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913497105664