Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq45583 136 2e-29 seq52979 132 2e-28 seq47166 132 2e-28 seq54480 127 8e-27 seq33900 109 2e-21 seq17543 109 2e-21 seq51124 104 1e-19 seq165392 102 3e-19 seq34 91.5 6e-16 >seq45583 Length=22422 Score = 136 bits (150), Expect = 2e-29 Identities = 114/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 544 GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGG 603 |||| |||||| ||| | |||| ||||||||||||||||||||||||||||| ||| Sbjct 1457 GATTAGAGTAATAGCGTGTTTGTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGAA 1516 Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 | ||| ||| |||| ||| |||| | ||| ||| | ||| ||||||||||| | ||| Sbjct 1517 TTAAGTCAGGTGAAAACCTGATGGAAGTTCGTAGCAATACTGACGTGCAAATCGTTTGTC 1576 Query 664 AAATTTGGGTATAGGGGCGA 683 |||||||||||||||||||| Sbjct 1577 AAATTTGGGTATAGGGGCGA 1596 Score = 132 bits (146), Expect = 2e-28 Identities = 120/150 (80%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 536 TTCGGATGGA--TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGC 593 ||| ||| || ||||||||| |||||| |||| ||||||||||||||||||||||||| Sbjct 18896 TTCAGATAGAGTTTTGAGTAATAGCATATTTGTTAGGACCCGAAAGATGGTGAACTATGC 18955 Query 594 CTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAA 653 ||| ||| | ||| ||| |||| ||| |||| | | | |||| | ||| ||||||| Sbjct 18956 TTGAGTAGAATAAAGTCAGGTGAAAACCTGATGGAAGTTTGTAGCGATACTGACGTGCAA 19015 Query 654 ATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| |||||||| || |||||||||||| Sbjct 19016 ATCGTTCGTCAAACTTAAGTATAGGGGCGA 19045 Score = 78.8 bits (86), Expect = 4e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 396 GGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTT 455 |||| ||| | ||||||||| |||||||| ||||||||||||||| | ||| |||||| Sbjct 18735 GGTTTTAAATGTCCCGTCTTGAAACACGGATCAAGGAGTCTAACATATGTGCAAGTGTTA 18794 Query 456 GGGTGTCAAAC 466 | ||||||||| Sbjct 18795 GAGTGTCAAAC 18805 Score = 77.0 bits (84), Expect = 1e-11 Identities = 93/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 78 TAAATTTCTTCTAAAGCTAAATA--TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGAT 135 ||||||| | ||||||||| || | || | ||||||||| ||||||| ||| Sbjct 18296 TAAATTTTATATAAAGCTAAGTAAGTAATGCAAA-ACCGATAGCATACAAGTACCATGAG 18354 Query 136 CGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGA 195 ||||||||||||| |||||| ||| |||||| ||||| | |||||||||| || || Sbjct 18355 GGAAAGATGAAAAGAACTTTGAAAAAAGAGTT-AAAAGTGCTTGAAATTGTTAGAATAGA 18413 Query 196 AGC 198 ||| Sbjct 18414 AGC 18416 >seq52979 Length=4639 Score = 132 bits (146), Expect = 2e-28 Identities = 120/150 (80%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 536 TTCGGATGGA--TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGC 593 ||| ||| || ||||||||| |||||| |||| ||||||||||||||||||||||||| Sbjct 529 TTCAGATAGAGTTTTGAGTAATAGCATATTTGTTAGGACCCGAAAGATGGTGAACTATGC 470 Query 594 CTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAA 653 ||| ||| | ||| ||| |||| ||| |||| | | | |||| | ||| ||||||| Sbjct 469 TTGAGTAGAATAAAGTCAGGTGAAAACCTGATGGAAGTTTGTAGCGATACTGACGTGCAA 410 Query 654 ATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| |||||||| || |||||||||||| Sbjct 409 ATCGTTCGTCAAACTTAAGTATAGGGGCGA 380 Score = 78.8 bits (86), Expect = 4e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 396 GGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTT 455 |||| ||| | ||||||||| |||||||| ||||||||||||||| | ||| |||||| Sbjct 690 GGTTTTAAATGTCCCGTCTTGAAACACGGATCAAGGAGTCTAACATATGTGCAAGTGTTA 631 Query 456 GGGTGTCAAAC 466 | ||||||||| Sbjct 630 GAGTGTCAAAC 620 Score = 77.0 bits (84), Expect = 1e-11 Identities = 93/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 78 TAAATTTCTTCTAAAGCTAAATA--TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGAT 135 ||||||| | ||||||||| || | || | ||||||||| ||||||| ||| Sbjct 1129 TAAATTTTATATAAAGCTAAGTAAGTAATGCAAA-ACCGATAGCATACAAGTACCATGAG 1071 Query 136 CGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGA 195 ||||||||||||| |||||| ||| |||||| ||||| | |||||||||| || || Sbjct 1070 GGAAAGATGAAAAGAACTTTGAAAAAAGAGTT-AAAAGTGCTTGAAATTGTTAGAATAGA 1012 Query 196 AGC 198 ||| Sbjct 1011 AGC 1009 >seq47166 Length=3779 Score = 132 bits (146), Expect = 2e-28 Identities = 120/150 (80%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 536 TTCGGATGGA--TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGC 593 ||| ||| || ||||||||| |||||| |||| ||||||||||||||||||||||||| Sbjct 1636 TTCAGATAGAGTTTTGAGTAATAGCATATTTGTTAGGACCCGAAAGATGGTGAACTATGC 1695 Query 594 CTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAA 653 ||| ||| | ||| ||| |||| ||| |||| | | | |||| | ||| ||||||| Sbjct 1696 TTGAGTAGAATAAAGTCAGGTGAAAACCTGATGGAAGTTTGTAGCGATACTGACGTGCAA 1755 Query 654 ATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| |||||||| || |||||||||||| Sbjct 1756 ATCGTTCGTCAAACTTAAGTATAGGGGCGA 1785 Score = 78.8 bits (86), Expect = 4e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 396 GGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTT 455 |||| ||| | ||||||||| |||||||| ||||||||||||||| | ||| |||||| Sbjct 1475 GGTTTTAAATGTCCCGTCTTGAAACACGGATCAAGGAGTCTAACATATGTGCAAGTGTTA 1534 Query 456 GGGTGTCAAAC 466 | ||||||||| Sbjct 1535 GAGTGTCAAAC 1545 Score = 77.0 bits (84), Expect = 1e-11 Identities = 93/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 78 TAAATTTCTTCTAAAGCTAAATA--TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGAT 135 ||||||| | ||||||||| || | || | ||||||||| ||||||| ||| Sbjct 1036 TAAATTTTATATAAAGCTAAGTAAGTAATGCAAA-ACCGATAGCATACAAGTACCATGAG 1094 Query 136 CGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGA 195 ||||||||||||| |||||| ||| |||||| ||||| | |||||||||| || || Sbjct 1095 GGAAAGATGAAAAGAACTTTGAAAAAAGAGTT-AAAAGTGCTTGAAATTGTTAGAATAGA 1153 Query 196 AGC 198 ||| Sbjct 1154 AGC 1156 >seq54480 Length=4469 Score = 127 bits (140), Expect = 8e-27 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 596 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 537 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || || ||| ||| | ||||||||| |||| | |||||||||||| || Sbjct 536 GGTCCGTAGAGGTCCTGACATGCAAATCGGTCGTTCGACCTGGGTATAGGGGTGA 482 >seq33900 Length=10600 Score = 109 bits (120), Expect = 2e-21 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 577 AAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCA 636 |||||||||||||||||||| |||| |||||||||||||||||||||||||| | | Sbjct 7129 AAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCNGTA 7070 Query 637 GCGGTTCTGGCGTGCAAATCGATCGTC 663 ||||| ||| ||||||||||| ||||| Sbjct 7069 GCGGTCCTGACGTGCAAATCGGTCGTC 7043 >seq17543 Length=17490 Score = 109 bits (120), Expect = 2e-21 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 15336 GGACCCAAAAGATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGGAAACTCTGGTGGA 15395 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATC 656 | | |||||| ||| |||||||||| Sbjct 15396 GATCTGTAGCGGTCCTGACGTGCAAATC 15423 >seq51124 Length=11048 Score = 104 bits (114), Expect = 1e-19 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||| ||||||||||||||||||||| |||| | ||||||||||||||||||||| Sbjct 304 GGACCCAAAAGATGGTGAACTATGCCTGGGCAGGGCAAGGCCAGAGGAAACTCTGGTGGA 363 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || | |||||| ||| |||||||||| || || | ||| || ||||| || Sbjct 364 GGTCCCTAGCGGTCCTGACGTGCAAATCAGTCCTCCGACCTGGATAGAGGGGTGA 418 >seq165392 Length=657 Score = 102 bits (112), Expect = 3e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 ||||||| ||||||||| |||| ||||||||||||||||||| |||||| || |||| Sbjct 384 ATGGTGACCTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGCTGGAGGTCCGTAGCG 443 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||| |||| |||||| | ||| | |||||||||||| || Sbjct 444 GTCCTGACGTGTAAATCGGTTGTCCGACCTGGGTATAGGGGTGA 487 >seq34 Length=137201 Score = 91.5 bits (100), Expect = 6e-16 Identities = 85/108 (79%), Gaps = 5/108 (5%) Strand=Plus/Minus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 ||||||||||||||||||||| || |||||||||||||||||||||||||| || Sbjct 121469 AAAGATGGTGAACTATGCCTG-----GGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGT 121415 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || | | ||| | ||||||||| || || | ||||| ||| || || Sbjct 121414 AGTGATCCTGACATGCAAATCGGTCATCTGACCTGGGTGTAGAGGTGA 121367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2076008841400