Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21]
186,068 sequences; 1,520,334,138 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq45583 136 2e-29
seq52979 132 2e-28
seq47166 132 2e-28
seq54480 127 8e-27
seq33900 109 2e-21
seq17543 109 2e-21
seq51124 104 1e-19
seq165392 102 3e-19
seq34 91.5 6e-16
>seq45583
Length=22422
Score = 136 bits (150), Expect = 2e-29
Identities = 114/140 (81%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 544 GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGG 603
|||| |||||| ||| | |||| ||||||||||||||||||||||||||||| |||
Sbjct 1457 GATTAGAGTAATAGCGTGTTTGTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGAA 1516
Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663
| ||| ||| |||| ||| |||| | ||| ||| | ||| ||||||||||| | |||
Sbjct 1517 TTAAGTCAGGTGAAAACCTGATGGAAGTTCGTAGCAATACTGACGTGCAAATCGTTTGTC 1576
Query 664 AAATTTGGGTATAGGGGCGA 683
||||||||||||||||||||
Sbjct 1577 AAATTTGGGTATAGGGGCGA 1596
Score = 132 bits (146), Expect = 2e-28
Identities = 120/150 (80%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 536 TTCGGATGGA--TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGC 593
||| ||| || ||||||||| |||||| |||| |||||||||||||||||||||||||
Sbjct 18896 TTCAGATAGAGTTTTGAGTAATAGCATATTTGTTAGGACCCGAAAGATGGTGAACTATGC 18955
Query 594 CTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAA 653
||| ||| | ||| ||| |||| ||| |||| | | | |||| | ||| |||||||
Sbjct 18956 TTGAGTAGAATAAAGTCAGGTGAAAACCTGATGGAAGTTTGTAGCGATACTGACGTGCAA 19015
Query 654 ATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||| |||||||| || ||||||||||||
Sbjct 19016 ATCGTTCGTCAAACTTAAGTATAGGGGCGA 19045
Score = 78.8 bits (86), Expect = 4e-12
Identities = 60/71 (85%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 396 GGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTT 455
|||| ||| | ||||||||| |||||||| ||||||||||||||| | ||| ||||||
Sbjct 18735 GGTTTTAAATGTCCCGTCTTGAAACACGGATCAAGGAGTCTAACATATGTGCAAGTGTTA 18794
Query 456 GGGTGTCAAAC 466
| |||||||||
Sbjct 18795 GAGTGTCAAAC 18805
Score = 77.0 bits (84), Expect = 1e-11
Identities = 93/123 (76%), Gaps = 4/123 (3%)
Strand=Plus/Plus
Query 78 TAAATTTCTTCTAAAGCTAAATA--TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGAT 135
||||||| | ||||||||| || | || | ||||||||| ||||||| |||
Sbjct 18296 TAAATTTTATATAAAGCTAAGTAAGTAATGCAAA-ACCGATAGCATACAAGTACCATGAG 18354
Query 136 CGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGA 195
||||||||||||| |||||| ||| |||||| ||||| | |||||||||| || ||
Sbjct 18355 GGAAAGATGAAAAGAACTTTGAAAAAAGAGTT-AAAAGTGCTTGAAATTGTTAGAATAGA 18413
Query 196 AGC 198
|||
Sbjct 18414 AGC 18416
>seq52979
Length=4639
Score = 132 bits (146), Expect = 2e-28
Identities = 120/150 (80%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 536 TTCGGATGGA--TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGC 593
||| ||| || ||||||||| |||||| |||| |||||||||||||||||||||||||
Sbjct 529 TTCAGATAGAGTTTTGAGTAATAGCATATTTGTTAGGACCCGAAAGATGGTGAACTATGC 470
Query 594 CTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAA 653
||| ||| | ||| ||| |||| ||| |||| | | | |||| | ||| |||||||
Sbjct 469 TTGAGTAGAATAAAGTCAGGTGAAAACCTGATGGAAGTTTGTAGCGATACTGACGTGCAA 410
Query 654 ATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||| |||||||| || ||||||||||||
Sbjct 409 ATCGTTCGTCAAACTTAAGTATAGGGGCGA 380
Score = 78.8 bits (86), Expect = 4e-12
Identities = 60/71 (85%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 396 GGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTT 455
|||| ||| | ||||||||| |||||||| ||||||||||||||| | ||| ||||||
Sbjct 690 GGTTTTAAATGTCCCGTCTTGAAACACGGATCAAGGAGTCTAACATATGTGCAAGTGTTA 631
Query 456 GGGTGTCAAAC 466
| |||||||||
Sbjct 630 GAGTGTCAAAC 620
Score = 77.0 bits (84), Expect = 1e-11
Identities = 93/123 (76%), Gaps = 4/123 (3%)
Strand=Plus/Minus
Query 78 TAAATTTCTTCTAAAGCTAAATA--TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGAT 135
||||||| | ||||||||| || | || | ||||||||| ||||||| |||
Sbjct 1129 TAAATTTTATATAAAGCTAAGTAAGTAATGCAAA-ACCGATAGCATACAAGTACCATGAG 1071
Query 136 CGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGA 195
||||||||||||| |||||| ||| |||||| ||||| | |||||||||| || ||
Sbjct 1070 GGAAAGATGAAAAGAACTTTGAAAAAAGAGTT-AAAAGTGCTTGAAATTGTTAGAATAGA 1012
Query 196 AGC 198
|||
Sbjct 1011 AGC 1009
>seq47166
Length=3779
Score = 132 bits (146), Expect = 2e-28
Identities = 120/150 (80%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 536 TTCGGATGGA--TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGC 593
||| ||| || ||||||||| |||||| |||| |||||||||||||||||||||||||
Sbjct 1636 TTCAGATAGAGTTTTGAGTAATAGCATATTTGTTAGGACCCGAAAGATGGTGAACTATGC 1695
Query 594 CTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAA 653
||| ||| | ||| ||| |||| ||| |||| | | | |||| | ||| |||||||
Sbjct 1696 TTGAGTAGAATAAAGTCAGGTGAAAACCTGATGGAAGTTTGTAGCGATACTGACGTGCAA 1755
Query 654 ATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||| |||||||| || ||||||||||||
Sbjct 1756 ATCGTTCGTCAAACTTAAGTATAGGGGCGA 1785
Score = 78.8 bits (86), Expect = 4e-12
Identities = 60/71 (85%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 396 GGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTT 455
|||| ||| | ||||||||| |||||||| ||||||||||||||| | ||| ||||||
Sbjct 1475 GGTTTTAAATGTCCCGTCTTGAAACACGGATCAAGGAGTCTAACATATGTGCAAGTGTTA 1534
Query 456 GGGTGTCAAAC 466
| |||||||||
Sbjct 1535 GAGTGTCAAAC 1545
Score = 77.0 bits (84), Expect = 1e-11
Identities = 93/123 (76%), Gaps = 4/123 (3%)
Strand=Plus/Plus
Query 78 TAAATTTCTTCTAAAGCTAAATA--TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGAT 135
||||||| | ||||||||| || | || | ||||||||| ||||||| |||
Sbjct 1036 TAAATTTTATATAAAGCTAAGTAAGTAATGCAAA-ACCGATAGCATACAAGTACCATGAG 1094
Query 136 CGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGA 195
||||||||||||| |||||| ||| |||||| ||||| | |||||||||| || ||
Sbjct 1095 GGAAAGATGAAAAGAACTTTGAAAAAAGAGTT-AAAAGTGCTTGAAATTGTTAGAATAGA 1153
Query 196 AGC 198
|||
Sbjct 1154 AGC 1156
>seq54480
Length=4469
Score = 127 bits (140), Expect = 8e-27
Identities = 97/115 (84%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 596 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 537
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| || || ||| ||| | ||||||||| |||| | |||||||||||| ||
Sbjct 536 GGTCCGTAGAGGTCCTGACATGCAAATCGGTCGTTCGACCTGGGTATAGGGGTGA 482
>seq33900
Length=10600
Score = 109 bits (120), Expect = 2e-21
Identities = 76/87 (87%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 577 AAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCA 636
|||||||||||||||||||| |||| |||||||||||||||||||||||||| | |
Sbjct 7129 AAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCNGTA 7070
Query 637 GCGGTTCTGGCGTGCAAATCGATCGTC 663
||||| ||| ||||||||||| |||||
Sbjct 7069 GCGGTCCTGACGTGCAAATCGGTCGTC 7043
>seq17543
Length=17490
Score = 109 bits (120), Expect = 2e-21
Identities = 77/88 (88%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 15336 GGACCCAAAAGATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGGAAACTCTGGTGGA 15395
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATC 656
| | |||||| ||| ||||||||||
Sbjct 15396 GATCTGTAGCGGTCCTGACGTGCAAATC 15423
>seq51124
Length=11048
Score = 104 bits (114), Expect = 1e-19
Identities = 92/115 (80%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||| ||||||||||||||||||||| |||| | |||||||||||||||||||||
Sbjct 304 GGACCCAAAAGATGGTGAACTATGCCTGGGCAGGGCAAGGCCAGAGGAAACTCTGGTGGA 363
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| | |||||| ||| |||||||||| || || | ||| || ||||| ||
Sbjct 364 GGTCCCTAGCGGTCCTGACGTGCAAATCAGTCCTCCGACCTGGATAGAGGGGTGA 418
>seq165392
Length=657
Score = 102 bits (112), Expect = 3e-19
Identities = 85/104 (82%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639
||||||| ||||||||| |||| ||||||||||||||||||| |||||| || ||||
Sbjct 384 ATGGTGACCTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGCTGGAGGTCCGTAGCG 443
Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| ||| |||| |||||| | ||| | |||||||||||| ||
Sbjct 444 GTCCTGACGTGTAAATCGGTTGTCCGACCTGGGTATAGGGGTGA 487
>seq34
Length=137201
Score = 91.5 bits (100), Expect = 6e-16
Identities = 85/108 (79%), Gaps = 5/108 (5%)
Strand=Plus/Minus
Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635
||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 121469 AAAGATGGTGAACTATGCCTG-----GGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGT 121415
Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| | | ||| | ||||||||| || || | ||||| ||| || ||
Sbjct 121414 AGTGATCCTGACATGCAAATCGGTCATCTGACCTGGGTGTAGAGGTGA 121367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2076008841400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |