Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq45583 297 3e-78 seq14210 161 2e-37 seq32586 127 3e-27 seq42224 118 2e-24 seq5222 98.7 2e-18 seq1203 73.4 6e-11 >seq45583 Length=22422 Score = 297 bits (328), Expect = 3e-78 Identities = 220/257 (86%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||| | ||| | | ||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 16954 ACTTGTTGGATGCATCATTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAGA 16895 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | | || | | ||||| ||||||||| | Sbjct 16894 CCTGTTATTGCCTCAAACTTCCTTGCGTTAGACACGCAAAGTCCTTCTAAGAAGTAATTT 16835 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 | ||| | ||| | |||||||||||||||||||||||||||||| ||||||||| Sbjct 16834 AAAAACAAAAGTTTTTAACCCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAA 16775 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 16774 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATTAAGAA 16715 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 16714 AGAGCTGTCAATCTGTC 16698 >seq14210 Length=56659 Score = 161 bits (178), Expect = 2e-37 Identities = 94/97 (97%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 162 TCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 36857 TCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 36916 Query 222 ACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| |||||| ||||||||||||| ||||||| Sbjct 36917 ACCACCCACAGAATCGAGAAAGAGCTATCGATCTGTC 36953 Score = 149 bits (164), Expect = 1e-33 Identities = 146/185 (79%), Gaps = 14/185 (8%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| || Sbjct 30011 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 30069 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| | || |||||| | |||| | |||||||||||||| | | || ||| || Sbjct 30070 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACC--GCTC 30126 Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | |||| ||| |||||| | | |||||||||||||||||||||||||||| Sbjct 30127 G--GGGGTCGCATAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGA 30184 Query 187 CAAAT 191 ||||| Sbjct 30185 CAAAT 30189 >seq32586 Length=8230 Score = 127 bits (140), Expect = 3e-27 Identities = 84/93 (90%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 || |||| ||||||||||||||||||| |||||| ||||||||||||||||||||| ||| Sbjct 6802 TCATTATTGGAATTAACCAGACAAATCGCTCCACTAACTAAGAACGGCCATGCACCGCCA 6861 Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| |||||| |||||||||||| ||||||| Sbjct 6862 CCCACAGAATCGAGAAAGAGCTATTGATCTGTC 6894 >seq42224 Length=6153 Score = 118 bits (130), Expect = 2e-24 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 6153 ACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGAG 6094 Query 246 CTATCAATCTGTC 258 ||||| ||||||| Sbjct 6093 CTATCGATCTGTC 6081 >seq5222 Length=115131 Score = 98.7 bits (108), Expect = 2e-18 Identities = 92/116 (79%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 || |||||| | | | || ||| ||||| ||||||||| ||||||||||||||||||| Sbjct 56931 TAATTAGCATGCCAGAGCCTTGTTGGTTATTGGAATTAACTAGACAAATCACTCCACCAA 56990 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||| |||||| ||| | || |||||||| ||| |||||| ||||||| Sbjct 56991 CTAAAAACAACCATGCTCCA-CTGGCACAGAATCAAAAAACAGCTATTGATCTGTC 57045 >seq1203 Length=62393 Score = 73.4 bits (80), Expect = 6e-11 Identities = 55/65 (85%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 161 CTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCAC 220 || ||| ||| ||||||||| ||||||||| |||||||||||||||||||| ||||| Sbjct 296 CTTGTTTGTTGTCGGAATTATGCAGACAAATTGCTCCACCAACTAAGAACGGCTATGCAT 355 Query 221 CACCA 225 | ||| Sbjct 356 CTCCA 360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795363741108