Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq103164 347 2e-93 seq45583 347 2e-93 seq14210 295 1e-77 seq72915 194 3e-47 seq5272 136 7e-30 seq32063 109 9e-22 seq8149 75.2 2e-11 >seq103164 Length=1759 Score = 347 bits (384), Expect = 2e-93 Identities = 233/260 (90%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 815 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATT 756 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | ||||||||||||| || ||| || |||||| || ||||||||||||||||||| Sbjct 755 GGCGGGTGAACAATCCGACACTTTGGGACTTCTGCGTCCCAATGATAGGAAGAGCCGACA 696 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 695 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 636 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||||||||||||||| |||||||||| || ||| || |||||||||||||||||| Sbjct 635 GTGGTAACTTTTCTGACACCTCTAGCTGAAAGTTTTTCAGGCCTAAAGGATCGATAGGCC 576 Query 273 ACACTTTCATGGTTTGTATT 292 | |||||| ||||||||| Sbjct 575 ATGCTTTCACAGTTTGTATT 556 >seq45583 Length=22422 Score = 347 bits (384), Expect = 2e-93 Identities = 233/260 (90%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 21085 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATT 21026 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | ||||||||||||| || ||| || |||||| || ||||||||||||||||||| Sbjct 21025 GGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGACA 20966 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20965 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 20906 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||||||||||||||| |||||||||| || ||| || |||||||||||||||||| Sbjct 20905 GTGGTAACTTTTCTGACACCTCTAGCTGAAAGTTTTTCAGGCCTAAAGGATCGATAGGCC 20846 Query 273 ACACTTTCATGGTTTGTATT 292 | |||||| ||||||||| Sbjct 20845 ATGCTTTCACAGTTTGTATT 20826 >seq14210 Length=56659 Score = 295 bits (326), Expect = 1e-77 Identities = 223/263 (85%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 23439 TCATCAGTAGGGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCACGTTCCCTA 23498 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||| ||||||| ||||||| |||||||||||| |||||||||||||| || Sbjct 23499 GTAGTGGGTAAACAATCTAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGA 23558 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| || || ||||||||||||||| ||||||||||||||||| Sbjct 23559 CATCGAAGGATCAAAAAGCGACATCACTATGAACGCTTGGCCACCACAAGCCAGTTATCC 23618 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||| ||||||||||| |||||| || | ||| | | | ||||||| ||| Sbjct 23619 CTGTGCTAACTTTTCTGACACCTCCTGCTTAAAAACCAAAAAGTCAGAAGGATCATGAGG 23678 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| ||| ||||||| Sbjct 23679 CCCCGCTTTCACGGTCTGTATTC 23701 >seq72915 Length=9929 Score = 194 bits (214), Expect = 3e-47 Identities = 148/175 (85%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 7 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCT 66 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 67 ATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGC 126 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | ||||||| ||||| | |||||| ||| ||||||| Sbjct 127 TTAAAACCCAAAAAGTCAGAAGGATCATGAGGCCCCGCTTTCACGGTCTGTATTC 181 >seq5272 Length=29407 Score = 136 bits (150), Expect = 7e-30 Identities = 114/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 154 CGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213 |||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| Sbjct 52 CGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGACCGCCACAAGCCAATTATCCCTG 111 Query 214 TGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCA 273 |||||||||||||| |||||| || | ||| | | | |||||| | ||||| Sbjct 112 TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATAGTGAGGCCC 171 Query 274 CACTTTCATGGTTTGTATTC 293 | |||||| || ||||||| Sbjct 172 CGCTTTCACAGTCTGTATTC 191 >seq32063 Length=16159 Score = 109 bits (120), Expect = 9e-22 Identities = 74/82 (90%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAA--CCCAGCTCACGTTCCCT 89 |||||| || ||||||||||||||||| ||||||| ||||| ||||||||| ||| ||| Sbjct 5604 CATCAGCAGAGTAAAACTAACCTGTCTTATGACGGCCTAAAAACCCAGCTCATGTTTCCT 5545 Query 90 ATTAGTGGGTGAACAATCCAAC 111 |||||||||||||||||||||| Sbjct 5544 ATTAGTGGGTGAACAATCCAAC 5523 >seq8149 Length=20989 Score = 75.2 bits (82), Expect = 2e-11 Identities = 44/46 (96%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 || ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 16225 AAAGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTGTTCTG 16180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 852810235008