Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21]
186,068 sequences; 1,520,334,138 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq103164 347 2e-93
seq45583 347 2e-93
seq14210 295 1e-77
seq72915 194 3e-47
seq5272 136 7e-30
seq32063 109 9e-22
seq8149 75.2 2e-11
>seq103164
Length=1759
Score = 347 bits (384), Expect = 2e-93
Identities = 233/260 (90%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 815 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATT 756
Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152
| ||||||||||||| || ||| || |||||| || |||||||||||||||||||
Sbjct 755 GGCGGGTGAACAATCCGACACTTTGGGACTTCTGCGTCCCAATGATAGGAAGAGCCGACA 696
Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 636
Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272
||||||||||||||| |||||||||| || ||| || ||||||||||||||||||
Sbjct 635 GTGGTAACTTTTCTGACACCTCTAGCTGAAAGTTTTTCAGGCCTAAAGGATCGATAGGCC 576
Query 273 ACACTTTCATGGTTTGTATT 292
| |||||| |||||||||
Sbjct 575 ATGCTTTCACAGTTTGTATT 556
>seq45583
Length=22422
Score = 347 bits (384), Expect = 2e-93
Identities = 233/260 (90%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 21085 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATT 21026
Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152
| ||||||||||||| || ||| || |||||| || |||||||||||||||||||
Sbjct 21025 GGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGACA 20966
Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20965 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 20906
Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272
||||||||||||||| |||||||||| || ||| || ||||||||||||||||||
Sbjct 20905 GTGGTAACTTTTCTGACACCTCTAGCTGAAAGTTTTTCAGGCCTAAAGGATCGATAGGCC 20846
Query 273 ACACTTTCATGGTTTGTATT 292
| |||||| |||||||||
Sbjct 20845 ATGCTTTCACAGTTTGTATT 20826
>seq14210
Length=56659
Score = 295 bits (326), Expect = 1e-77
Identities = 223/263 (85%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 23439 TCATCAGTAGGGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCACGTTCCCTA 23498
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||||| ||||||| ||||||| |||||||||||| |||||||||||||| ||
Sbjct 23499 GTAGTGGGTAAACAATCTAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGA 23558
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||||||||||||||||||| || || ||||||||||||||| |||||||||||||||||
Sbjct 23559 CATCGAAGGATCAAAAAGCGACATCACTATGAACGCTTGGCCACCACAAGCCAGTTATCC 23618
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270
||||| ||||||||||| |||||| || | ||| | | | ||||||| |||
Sbjct 23619 CTGTGCTAACTTTTCTGACACCTCCTGCTTAAAAACCAAAAAGTCAGAAGGATCATGAGG 23678
Query 271 CCACACTTTCATGGTTTGTATTC 293
|| | |||||| ||| |||||||
Sbjct 23679 CCCCGCTTTCACGGTCTGTATTC 23701
>seq72915
Length=9929
Score = 194 bits (214), Expect = 3e-47
Identities = 148/175 (85%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 7 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCT 66
Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 67 ATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGC 126
Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| | | | ||||||| ||||| | |||||| ||| |||||||
Sbjct 127 TTAAAACCCAAAAAGTCAGAAGGATCATGAGGCCCCGCTTTCACGGTCTGTATTC 181
>seq5272
Length=29407
Score = 136 bits (150), Expect = 7e-30
Identities = 114/140 (81%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 154 CGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213
|||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct 52 CGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGACCGCCACAAGCCAATTATCCCTG 111
Query 214 TGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCA 273
|||||||||||||| |||||| || | ||| | | | |||||| | |||||
Sbjct 112 TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATAGTGAGGCCC 171
Query 274 CACTTTCATGGTTTGTATTC 293
| |||||| || |||||||
Sbjct 172 CGCTTTCACAGTCTGTATTC 191
>seq32063
Length=16159
Score = 109 bits (120), Expect = 9e-22
Identities = 74/82 (90%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAA--CCCAGCTCACGTTCCCT 89
|||||| || ||||||||||||||||| ||||||| ||||| ||||||||| ||| |||
Sbjct 5604 CATCAGCAGAGTAAAACTAACCTGTCTTATGACGGCCTAAAAACCCAGCTCATGTTTCCT 5545
Query 90 ATTAGTGGGTGAACAATCCAAC 111
||||||||||||||||||||||
Sbjct 5544 ATTAGTGGGTGAACAATCCAAC 5523
>seq8149
Length=20989
Score = 75.2 bits (82), Expect = 2e-11
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Minus
Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227
|| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 16225 AAAGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTGTTCTG 16180
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 852810235008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |