Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq45583 259 9e-67 seq14210 179 7e-43 >seq45583 Length=22422 Score = 259 bits (286), Expect = 9e-67 Identities = 213/258 (83%), Gaps = 1/258 (0%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTAT-CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||| ||||| | || || | | | |||||||||||||||||||||||||||| Sbjct 16841 CTTCTTAGAAGGACTTTGCGTGTCTAACGCAAGGAAGTTTGAGGCAATAACAGGTCTGTG 16900 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||||||||||||| |||||||||||||| ||| | ||||| |||| || | Sbjct 16901 ATGCCCTTAGATGTTCTGGGCTGCACGCGCGCTACAATGATGCATCCAACAAGTTTATAA 16960 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||| || | | | ||||||||| | || | | ||| |||||||||| |||| Sbjct 16961 CCTTGGCTGGTAAGCTTAGGTAATCTTTTGAATGTGCATTGTGATGGGGATAGATTATTG 17020 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| |||| ||||||||||||||||||||||| ||||||||| ||| ||||| Sbjct 17021 TAATTATTAATCTTTAACGAGGAATGCCTAGTAAGCGCAAGTCATCAGCTTGCGCTGATT 17080 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 17081 ACGTCCCTGCCCTTTGTA 17098 >seq14210 Length=56659 Score = 179 bits (198), Expect = 7e-43 Identities = 192/250 (77%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 30109 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 30052 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | Sbjct 30051 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGTCTAC 29992 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| |||| |||||| | | || | | || || ||||||| | | |||| Sbjct 29991 CCTACGCCGACAGGTGCGGGTAACCCGTTGAACCCCATTCATGATGGGGATCGGGGATTG 29932 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| |||||||||| Sbjct 29931 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT 29872 Query 311 ACGTCCCTGC 320 | |||||||| Sbjct 29871 AAGTCCCTGC 29862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945437563904