Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq47166 486 6e-135 seq45583 486 6e-135 seq103164 396 9e-108 seq72915 396 9e-108 seq8149 161 3e-37 seq19448 156 1e-35 seq130340 120 1e-24 seq116864 120 1e-24 seq14210 98.7 3e-18 seq24497 96.9 1e-17 seq13921 91.5 5e-16 seq5272 77.0 1e-11 >seq47166 Length=3779 Score = 486 bits (538), Expect = 6e-135 Identities = 290/304 (95%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 3412 GCTCCCACTTATTCTACACCTTCTAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 3353 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 3352 ACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTAGTTTCGCTA 3293 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 3292 GATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 3233 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3232 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTC 3173 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 3172 ATTGAATTTCATCACATTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACC 3113 Query 536 ACTT 539 | || Sbjct 3112 AATT 3109 Score = 143 bits (158), Expect = 9e-32 Identities = 97/109 (89%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||| || ||| ||||||||||||||| |||| |||||||||||||||||||| Sbjct 3691 TTTTGGTCAACATGAGATTTCTGTTCTCATTGAGCTTGCCTTAGGACACCTGCGTTATTT 3632 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 3631 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCATC 3583 >seq45583 Length=22422 Score = 486 bits (538), Expect = 6e-135 Identities = 290/304 (95%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 3233 GCTCCCACTTATTCTACACCTTCTAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 3174 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 3173 ACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTAGTTTCGCTA 3114 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 3113 GATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 3054 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3053 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTC 2994 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 2993 ATTGAATTTCATCACATTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACC 2934 Query 536 ACTT 539 | || Sbjct 2933 AATT 2930 Score = 396 bits (438), Expect = 9e-108 Identities = 231/239 (97%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 20511 GCTCCCACTTATTCTACACCTTCTAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 20452 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 20451 ACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTAGTTTCGCTA 20392 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 20391 GATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 20332 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20331 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 20273 Score = 143 bits (158), Expect = 9e-32 Identities = 97/109 (89%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||| || ||| ||||||||||||||| |||| |||||||||||||||||||| Sbjct 3512 TTTTGGTCAACATGAGATTTCTGTTCTCATTGAGCTTGCCTTAGGACACCTGCGTTATTT 3453 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 3452 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCATC 3404 Score = 143 bits (158), Expect = 9e-32 Identities = 97/109 (89%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||| || ||| ||||||||||||||| |||| |||||||||||||||||||| Sbjct 20790 TTTTGGTCAACATGAGATTTCTGTTCTCATTGAGCTTGCCTTAGGACACCTGCGTTATTT 20731 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 20730 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCATC 20682 >seq103164 Length=1759 Score = 396 bits (438), Expect = 9e-108 Identities = 231/239 (97%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 241 GCTCCCACTTATTCTACACCTTCTAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 182 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 181 ACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTAGTTTCGCTA 122 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 121 GATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 62 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 3 Score = 143 bits (158), Expect = 9e-32 Identities = 97/109 (89%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||| || ||| ||||||||||||||| |||| |||||||||||||||||||| Sbjct 520 TTTTGGTCAACATGAGATTTCTGTTCTCATTGAGCTTGCCTTAGGACACCTGCGTTATTT 461 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 460 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCATC 412 >seq72915 Length=9929 Score = 396 bits (438), Expect = 9e-108 Identities = 351/435 (81%), Gaps = 23/435 (5%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| ||||||| |||| |||| | ||||||||||||||||||| | Sbjct 215 CTTCTGCTCCGCGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 274 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||||| |||| ||| | Sbjct 275 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGACGCTGTC-----CCC---TT 326 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 || | |||| | | | || |||| | || |||| ||| | Sbjct 327 GGAGCCAGAAG--CGAGAGCCCC---------TCGGGGCTCGCCCCC-CCGCCTCACCGG 374 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC-GCCGAAACGG--CTCCCAC 243 ||||| |||||||||| || ||||||||||||||| || ||| ||| ||||||| Sbjct 375 GTAAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCAGCCCGGGCGGGCCTCCCAC 434 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 ||||||||| ||||||| ||| |||||| | | ||||||||||||||||||||||||| Sbjct 435 TTATTCTACGCCTCTCATGTCTCTTCACAGGGCCAGACTAGAGTCAAGCTCAACAGGGTC 494 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 495 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 554 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 555 GTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 614 Query 424 ATTTGGCTACCTTAA 438 ||||||||| |||| Sbjct 615 ATTTGGCTATGTTAA 629 Score = 168 bits (186), Expect = 2e-39 Identities = 98/101 (97%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 972 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTT 1031 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||| ||||||||| Sbjct 1032 TGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 1072 >seq8149 Length=20989 Score = 161 bits (178), Expect = 3e-37 Identities = 191/255 (75%), Gaps = 18/255 (7%) Strand=Plus/Plus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC-GCCGAA-ACGGC 237 ||||||| ||||| | |||| ||| || ||| ||||||||||| | || | | || | Sbjct 17102 TCATTGACTAAGTGACAAAATGATCAGAGTAATGGTATTTCACCAGTAGCAGTAGAC--C 17159 Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 |||||||||||| | ||||| | || |||||| | | || ||||||| |||||||| Sbjct 17160 TCCCACTTATTCCATGCCTCTTATGTTTCTTCACAGGGCCAGATTAGAGTCCAGCTCAAC 17219 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 || ||||||||| ||| |||| || |||||| | ||||||||| | ||||||| |||| Sbjct 17220 AGTGTCTTCTTTACCCAGTGATCCCCCCAAGCTC-TTCCCTTGG-TATGGTTTCATTAGA 17277 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||||| ||||| |||||||| |||| | ||| ||||||||||| Sbjct 17278 TAGTAGATGAGGACAATGGGAATC------------TCATATGTATCAATAATTAGATGA 17325 Query 418 CGAGGCATTTGGCTA 432 |||||||||| ||| Sbjct 17326 TGAGGCATTTGACTA 17340 >seq19448 Length=12744 Score = 156 bits (172), Expect = 1e-35 Identities = 95/101 (94%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| Sbjct 3314 CCTTAAGAGAGTCATAGTTACTTCCGCCGTTTACCCATGCTTCATTGAATTTCTTCACTT 3255 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||| |||||||||||| Sbjct 3254 TGACATTCAGAGCACTGGGCAGAAATCATATTGCGTCAACA 3214 Score = 120 bits (132), Expect = 1e-24 Identities = 75/81 (93%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3723 TAGTAGGTAGGGATAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGA 3664 Query 418 CGAGGCATTTGGCTACCTTAA 438 ||||| ||||||||| |||| Sbjct 3663 CGAGGGATTTGGCTATGTTAA 3643 >seq130340 Length=1154 Score = 120 bits (132), Expect = 1e-24 Identities = 69/71 (97%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1084 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACA 1143 Query 498 TTCAGAGCACT 508 ||||||||||| Sbjct 1144 TTCAGAGCACT 1154 >seq116864 Length=1416 Score = 120 bits (132), Expect = 1e-24 Identities = 69/71 (97%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1346 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACA 1405 Query 498 TTCAGAGCACT 508 ||||||||||| Sbjct 1406 TTCAGAGCACT 1416 >seq14210 Length=56659 Score = 98.7 bits (108), Expect = 3e-18 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 24 ATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCG 83 |||||||| |||| |||| | |||||||| |||||||||||||||| |||| ||| || Sbjct 23743 ATTTCTGTCCTCCCTGAGCTCGCCTTAGGAAACCTGCGTTATGGTTTGACAGGTGTACCA 23802 Query 84 CCCCAGCCAAACTCCCCACCTGAC 107 ||||| ||||||||||||||||| Sbjct 23803 TCCCAGTCAAACTCCCCACCTGAC 23826 >seq24497 Length=22229 Score = 96.9 bits (106), Expect = 1e-17 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 || |||||||||||||||||||||||| | | || |||||||||||||||| |||||| Sbjct 12016 GACTCATAGTTACTCCCGCCGTTTACCTGTGTTTCATTGAATTTCTTCACTTGGACATTT 12075 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAA 531 || |||||||| ||||||||| | |||| Sbjct 12076 AGTATACTGGGCAAAAATCACATCACATCAA 12106 >seq13921 Length=53427 Score = 91.5 bits (100), Expect = 5e-16 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| ||||||| |||| |||| | ||||||||||||||||||| | Sbjct 18996 CTTCTGCTCCGCGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 18937 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAA 94 |||| |||| ||| ||||||||| |||| Sbjct 18936 GTTTGACAGGTGTACCGCCCCAGTCAAA 18909 >seq5272 Length=29407 Score = 77.0 bits (84), Expect = 1e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||| | |||| ||||||| |||| |||| | ||||||||||||||||||| | Sbjct 225 CTTCTGCTCTGCGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 284 Query 67 GTTTAACAGATGTGCCGCCC 86 | || |||| ||| || ||| Sbjct 285 GCTTGACAGGTGTACCACCC 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1632157416064