Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21]
186,068 sequences; 1,520,334,138 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq47166 486 6e-135
seq45583 486 6e-135
seq103164 396 9e-108
seq72915 396 9e-108
seq8149 161 3e-37
seq19448 156 1e-35
seq130340 120 1e-24
seq116864 120 1e-24
seq14210 98.7 3e-18
seq24497 96.9 1e-17
seq13921 91.5 5e-16
seq5272 77.0 1e-11
>seq47166
Length=3779
Score = 486 bits (538), Expect = 6e-135
Identities = 290/304 (95%), Gaps = 0/304 (0%)
Strand=Plus/Minus
Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3412 GCTCCCACTTATTCTACACCTTCTAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 3353
Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 3352 ACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTAGTTTCGCTA 3293
Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3292 GATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 3233
Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3232 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTC 3173
Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3172 ATTGAATTTCATCACATTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACC 3113
Query 536 ACTT 539
| ||
Sbjct 3112 AATT 3109
Score = 143 bits (158), Expect = 9e-32
Identities = 97/109 (89%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67
||||| || ||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct 3691 TTTTGGTCAACATGAGATTTCTGTTCTCATTGAGCTTGCCTTAGGACACCTGCGTTATTT 3632
Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3631 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCATC 3583
>seq45583
Length=22422
Score = 486 bits (538), Expect = 6e-135
Identities = 290/304 (95%), Gaps = 0/304 (0%)
Strand=Plus/Minus
Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3233 GCTCCCACTTATTCTACACCTTCTAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 3174
Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 3173 ACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTAGTTTCGCTA 3114
Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3113 GATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 3054
Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3053 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTC 2994
Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2993 ATTGAATTTCATCACATTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACC 2934
Query 536 ACTT 539
| ||
Sbjct 2933 AATT 2930
Score = 396 bits (438), Expect = 9e-108
Identities = 231/239 (97%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 20511 GCTCCCACTTATTCTACACCTTCTAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 20452
Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 20451 ACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTAGTTTCGCTA 20392
Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 20391 GATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 20332
Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20331 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 20273
Score = 143 bits (158), Expect = 9e-32
Identities = 97/109 (89%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67
||||| || ||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct 3512 TTTTGGTCAACATGAGATTTCTGTTCTCATTGAGCTTGCCTTAGGACACCTGCGTTATTT 3453
Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3452 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCATC 3404
Score = 143 bits (158), Expect = 9e-32
Identities = 97/109 (89%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67
||||| || ||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct 20790 TTTTGGTCAACATGAGATTTCTGTTCTCATTGAGCTTGCCTTAGGACACCTGCGTTATTT 20731
Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 20730 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCATC 20682
>seq103164
Length=1759
Score = 396 bits (438), Expect = 9e-108
Identities = 231/239 (97%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTCCCACTTATTCTACACCTTCTAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 182
Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 181 ACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTAGTTTCGCTA 122
Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 62
Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 3
Score = 143 bits (158), Expect = 9e-32
Identities = 97/109 (89%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67
||||| || ||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct 520 TTTTGGTCAACATGAGATTTCTGTTCTCATTGAGCTTGCCTTAGGACACCTGCGTTATTT 461
Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 460 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCATC 412
>seq72915
Length=9929
Score = 396 bits (438), Expect = 9e-108
Identities = 351/435 (81%), Gaps = 23/435 (5%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| | |||| ||||||| |||| |||| | ||||||||||||||||||| |
Sbjct 215 CTTCTGCTCCGCGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 274
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||| |||| ||| ||||||||| ||||||||||||||||| |||| ||| |
Sbjct 275 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGACGCTGTC-----CCC---TT 326
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|| | |||| | | | || |||| | || |||| ||| |
Sbjct 327 GGAGCCAGAAG--CGAGAGCCCC---------TCGGGGCTCGCCCCC-CCGCCTCACCGG 374
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC-GCCGAAACGG--CTCCCAC 243
||||| |||||||||| || ||||||||||||||| || ||| ||| |||||||
Sbjct 375 GTAAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCAGCCCGGGCGGGCCTCCCAC 434
Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303
||||||||| ||||||| ||| |||||| | | |||||||||||||||||||||||||
Sbjct 435 TTATTCTACGCCTCTCATGTCTCTTCACAGGGCCAGACTAGAGTCAAGCTCAACAGGGTC 494
Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 554
Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 555 GTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 614
Query 424 ATTTGGCTACCTTAA 438
||||||||| ||||
Sbjct 615 ATTTGGCTATGTTAA 629
Score = 168 bits (186), Expect = 2e-39
Identities = 98/101 (97%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 972 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTT 1031
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||||| |||||||||
Sbjct 1032 TGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 1072
>seq8149
Length=20989
Score = 161 bits (178), Expect = 3e-37
Identities = 191/255 (75%), Gaps = 18/255 (7%)
Strand=Plus/Plus
Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC-GCCGAA-ACGGC 237
||||||| ||||| | |||| ||| || ||| ||||||||||| | || | | || |
Sbjct 17102 TCATTGACTAAGTGACAAAATGATCAGAGTAATGGTATTTCACCAGTAGCAGTAGAC--C 17159
Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297
|||||||||||| | ||||| | || |||||| | | || ||||||| ||||||||
Sbjct 17160 TCCCACTTATTCCATGCCTCTTATGTTTCTTCACAGGGCCAGATTAGAGTCCAGCTCAAC 17219
Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357
|| ||||||||| ||| |||| || |||||| | ||||||||| | ||||||| ||||
Sbjct 17220 AGTGTCTTCTTTACCCAGTGATCCCCCCAAGCTC-TTCCCTTGG-TATGGTTTCATTAGA 17277
Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417
|||||||| ||||| |||||||| |||| | ||| |||||||||||
Sbjct 17278 TAGTAGATGAGGACAATGGGAATC------------TCATATGTATCAATAATTAGATGA 17325
Query 418 CGAGGCATTTGGCTA 432
|||||||||| |||
Sbjct 17326 TGAGGCATTTGACTA 17340
>seq19448
Length=12744
Score = 156 bits (172), Expect = 1e-35
Identities = 95/101 (94%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
|||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||
Sbjct 3314 CCTTAAGAGAGTCATAGTTACTTCCGCCGTTTACCCATGCTTCATTGAATTTCTTCACTT 3255
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||||||||||||||||||||| ||||||||||||
Sbjct 3254 TGACATTCAGAGCACTGGGCAGAAATCATATTGCGTCAACA 3214
Score = 120 bits (132), Expect = 1e-24
Identities = 75/81 (93%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417
|||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3723 TAGTAGGTAGGGATAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGA 3664
Query 418 CGAGGCATTTGGCTACCTTAA 438
||||| ||||||||| ||||
Sbjct 3663 CGAGGGATTTGGCTATGTTAA 3643
>seq130340
Length=1154
Score = 120 bits (132), Expect = 1e-24
Identities = 69/71 (97%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1084 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACA 1143
Query 498 TTCAGAGCACT 508
|||||||||||
Sbjct 1144 TTCAGAGCACT 1154
>seq116864
Length=1416
Score = 120 bits (132), Expect = 1e-24
Identities = 69/71 (97%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1346 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACA 1405
Query 498 TTCAGAGCACT 508
|||||||||||
Sbjct 1406 TTCAGAGCACT 1416
>seq14210
Length=56659
Score = 98.7 bits (108), Expect = 3e-18
Identities = 72/84 (86%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 24 ATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCG 83
|||||||| |||| |||| | |||||||| |||||||||||||||| |||| ||| ||
Sbjct 23743 ATTTCTGTCCTCCCTGAGCTCGCCTTAGGAAACCTGCGTTATGGTTTGACAGGTGTACCA 23802
Query 84 CCCCAGCCAAACTCCCCACCTGAC 107
||||| |||||||||||||||||
Sbjct 23803 TCCCAGTCAAACTCCCCACCTGAC 23826
>seq24497
Length=22229
Score = 96.9 bits (106), Expect = 1e-17
Identities = 76/91 (84%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500
|| |||||||||||||||||||||||| | | || |||||||||||||||| ||||||
Sbjct 12016 GACTCATAGTTACTCCCGCCGTTTACCTGTGTTTCATTGAATTTCTTCACTTGGACATTT 12075
Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAA 531
|| |||||||| ||||||||| | ||||
Sbjct 12076 AGTATACTGGGCAAAAATCACATCACATCAA 12106
>seq13921
Length=53427
Score = 91.5 bits (100), Expect = 5e-16
Identities = 73/88 (83%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| | |||| ||||||| |||| |||| | ||||||||||||||||||| |
Sbjct 18996 CTTCTGCTCCGCGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 18937
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAA 94
|||| |||| ||| ||||||||| ||||
Sbjct 18936 GTTTGACAGGTGTACCGCCCCAGTCAAA 18909
>seq5272
Length=29407
Score = 77.0 bits (84), Expect = 1e-11
Identities = 65/80 (81%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| |||||| | |||| ||||||| |||| |||| | ||||||||||||||||||| |
Sbjct 225 CTTCTGCTCTGCGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 284
Query 67 GTTTAACAGATGTGCCGCCC 86
| || |||| ||| || |||
Sbjct 285 GCTTGACAGGTGTACCACCC 304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1632157416064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |