Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq103164 84.2 4e-14 seq45583 80.6 4e-13 >seq103164 Length=1759 Score = 84.2 bits (92), Expect = 4e-14 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | | |||||| | ||||| ||| || |||| || ||| Sbjct 846 GTACGAGAGGAACAGTTGG-TTCAGAC-ACTTGGTAAATGCATCTAGCTGAAAAGCTAGT 903 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 | ||||||||||||||| | ||||||| ||||| ||||||||||||||||| |||| Sbjct 904 GTTACGAAGCTACCATCTGATAGATTATGACTGAAAGCCTCTAAGTCAGAATCTATGC 961 >seq45583 Length=22422 Score = 80.6 bits (88), Expect = 4e-13 Identities = 89/116 (77%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | | |||||| |||||||| ||| | |||| || ||| Sbjct 21116 GTACGAGAGGAACAGTTGG-TTCAGA-TAATTGGTAAATGCAATTAGCTGAAAAGTTAGT 21173 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116 | ||||| ||| |||||| ||||||| ||||||||||||||||||||||| || Sbjct 21174 GTTGCGAAACTATCATCTGACAGATTATGACTGAACGCCTCTAAGTCAGAATCTAT 21229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 817723364352