Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq45583 401 2e-109 seq52979 237 5e-60 seq72915 235 2e-59 seq31692 168 2e-39 seq70794 143 8e-32 seq160560 136 1e-29 seq34660 100 9e-19 seq128558 91.5 4e-16 seq140390 84.2 7e-14 >seq45583 Length=22422 Score = 401 bits (444), Expect = 2e-109 Identities = 404/517 (78%), Gaps = 21/517 (4%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAA-AAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||||||||||||||| | || ||| |||| ||||| ||||||||||||| | Sbjct 15968 TCATTCCAATTACAAAGCATTTTAACTGCCTTGTACTGTTATTTCTTGTCACTACCTCTC 15909 Query 64 CG----TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||| | |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 15908 TTATGCTGTTAGAATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGT 15849 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||||||||||||||||||||||||||| |||||||| |||| | ||| ||| Sbjct 15848 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCCCCGTTAACCGTCACTGCCACGGT 15789 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 | |||| || | |||| ||||||| ||||||| |||||| |||||||| |||||| | Sbjct 15788 AAGCCAATACCATACCGTCGAAAGCTGATAGGTCAGAAACTTGAATGATTTATCGCCAG- 15730 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA---GGAGCCCCGAAGGGC-- 294 | | ||||||| | | ||||||| | ||||||||| | | || | Sbjct 15729 TTTGTACTCTGCGATTTGCTTAGTTATTGTAAATCACCAACTTTTATGCTTTAAAAACAT 15670 Query 295 --GTTGGTTTTTTATCTAATAAATACACCCCTTCCGA---AGTCGGGGTTTTTAGCATGT 349 ||||||||||||||||||||| | | |||| | ||| | | | | ||||| Sbjct 15669 ATATTGGTTTTTTATCTAATAAATGCTTCTCTTCTAAAACAGTTGAGAATGTGCTCATGT 15610 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGG--TACTATCAAATAAACGATA 407 ||||||||||||||||||||||||||||||||| || | | ||||||| |||| ||| Sbjct 15609 ATTAGCTCTAGAATTACCACGGTTATCCATGTA--AACGTTTGTTATCAAAGAAACTATA 15552 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467 |||| | |||||||||||| ||||||| ||||||| | | |||||||||||| ||||| Sbjct 15551 ACTGTTGTAATGAGCCATTTGCAGTTTTACTGTAT-TTTCGTTTATACTTAGACGTGCAT 15493 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||| |||||||||||||||||||||||| Sbjct 15492 GGCTTAATCTTTAAGACAAGCATATGACTACTGGCAG 15456 Score = 80.6 bits (88), Expect = 8e-13 Identities = 83/107 (78%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 337 GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCA 396 ||||||| ||| ||| ||||||||||||||||||||||||| || | | ||||| Sbjct 14401 GTTTTTA---TGTGTTAACTCTAGAATTACCACGGTTATCCATTTAATCGTTTGTTATCA 14345 Query 397 AATAAACGATAACTGAT-TTAATGAGCCATTCGCAGTTTCACTGTAT 442 || ||| ||||||| | | ||||||||||| | ||||| | |||| Sbjct 14344 AAAAAAATATAACTGTTGTAAATGAGCCATTGGTAGTTTTGCAGTAT 14298 >seq52979 Length=4639 Score = 237 bits (262), Expect = 5e-60 Identities = 235/298 (79%), Gaps = 17/298 (6%) Strand=Plus/Plus Query 220 TTGAATGAACCATCGCCGGCT--CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACC 277 |||||||| |||||| ||| || | |||||||| | ||||||||||| ||||||| Sbjct 3677 TTGAATGATTTATCGCCAGCTTTCA---CTATGCGATTTGCTAAGTTATTATAAATCACC 3733 Query 278 AAGGAGCCCCG-----AAGG--GCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAA 330 || | ||| || |||| |||||||||||||||||| | |||| ||| Sbjct 3734 AACTTCCATACTTTAAAAGCATGCATTGGCTTTTTATCTAATAAATACTTCTCTTCTGAA 3793 Query 331 ---GTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG 387 || | | | ||||||||||||||||||||||||||||||||||| || | Sbjct 3794 ACAGTTGAGAACGTGCTCATGTATTAGCTCTAGAATTACCACGGTTATCCATTTAAAACT 3853 Query 388 GTACT-ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT 446 | || ||||||||||| ||||||| |||||||||||||| ||||||| ||||||| || Sbjct 3854 TTTCTTATCAAATAAACTATAACTGTTTTAATGAGCCATTTGCAGTTTAACTGTATT-AT 3912 Query 447 TGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 3913 CGCTTATACTTAGACATGCATGGCTTAATCTTTAAGACAAGCATATGACTACTGGCAG 3970 >seq72915 Length=9929 Score = 235 bits (260), Expect = 2e-59 Identities = 160/180 (89%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 56 TACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 6939 TACCTCCCCGCGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 6998 Query 116 CCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCA 175 ||||||||||||||||||||||||||||| ||||| ||||||| |||||||| | |||| Sbjct 6999 CCGTTTCTCAGGCTCCCTCTCCGGAATCGTACCCTGATTCCCCATTACCCGTGGTCACCA 7058 Query 176 TGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGC 235 |||||||| | ||||||||||||||||||||||||| ||| ||||| |||||| Sbjct 7059 TGGTAGGCGCAGAAAGTACCATCGAAAGTTGATAGGGCAGACATTCGAATGCGTCATCGC 7118 >seq31692 Length=8460 Score = 168 bits (186), Expect = 2e-39 Identities = 170/215 (79%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAG-CATGTAT 351 ||||||||| ||| |||||| ||| | | || || ||| | | | | | ||||||| Sbjct 251 GTTGGTTTTGG-TCTGATAAATGCACTCATCCCCGGAGGTCAGCGCTCATCGGCATGTAT 309 Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||| || ||||||| ||| | || | | |||| ||| ||||| Sbjct 310 TAGCTCTAGAATTACGACAGTTATCCGAGTAACGGTGGGAGCGACCAAAGGAACCATAAC 369 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 ||||||||||||||||||||||||||||||| | | | ||||||||||||||| | Sbjct 370 TGATTTAATGAGCCATTCGCAGTTTCACTGTCATGCCCGTGTGTACTTAGACATGCATAG 429 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| |||||||||| Sbjct 430 CTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 463 >seq70794 Length=8325 Score = 143 bits (158), Expect = 8e-32 Identities = 85/89 (96%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 89 GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC 60 Query 149 CTAATTCCCCGTTACCCGTTGATACCATG 177 || |||||||||||||||| | |||||| Sbjct 61 CTGATTCCCCGTTACCCGTGGTCACCATG 89 >seq160560 Length=710 Score = 136 bits (150), Expect = 1e-29 Identities = 97/110 (88%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| |||||||||||||||||||||||||||||||||||| | | | || Sbjct 3 CAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTCACGCCCGTGTGTA 62 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 63 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 111 >seq34660 Length=44406 Score = 100 bits (110), Expect = 9e-19 Identities = 104/139 (75%), Gaps = 17/139 (12%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 |||||| |||||||| |||| | ||| ||||||| |||||| ||| Sbjct 36021 GCATGTGTTAGCTCTGGAATCATCACAGTTATCC---TAGTAA--------------AAC 36063 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463 |||||||||| |||||||||||| |||||||||||| | || | |||||||||| Sbjct 36064 CATAACTGATTCAATGAGCCATTCACAGTTTCACTGTCACGCCTGTGTGTACTTAGACAC 36123 Query 464 GCATGGCTTAATCTTTGAG 482 |||||||||||||||| || Sbjct 36124 GCATGGCTTAATCTTTCAG 36142 >seq128558 Length=1186 Score = 91.5 bits (100), Expect = 4e-16 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 ||||||||||||| | | | ||||||||||||||||||||||||||||||||||| Sbjct 1186 GCAGTTTCACTGTCACGCCCGTGTGTACTTAGACATGCATGGCTTAATCTTTGAGACAAG 1127 Query 488 CATATGACTACTGGCAG 504 |||||| |||||||||| Sbjct 1126 CATATG-CTACTGGCAG 1111 >seq140390 Length=989 Score = 84.2 bits (92), Expect = 7e-14 Identities = 50/51 (98%), Gaps = 1/51 (2%) Strand=Plus/Minus Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 989 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1507589628928