Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21]
186,068 sequences; 1,520,334,138 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq45583 401 2e-109
seq52979 237 5e-60
seq72915 235 2e-59
seq31692 168 2e-39
seq70794 143 8e-32
seq160560 136 1e-29
seq34660 100 9e-19
seq128558 91.5 4e-16
seq140390 84.2 7e-14
>seq45583
Length=22422
Score = 401 bits (444), Expect = 2e-109
Identities = 404/517 (78%), Gaps = 21/517 (4%)
Strand=Plus/Minus
Query 5 TCATTCCAATTACAAGACCCAA-AAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63
||||||||||||||| | || ||| |||| ||||| ||||||||||||| |
Sbjct 15968 TCATTCCAATTACAAAGCATTTTAACTGCCTTGTACTGTTATTTCTTGTCACTACCTCTC 15909
Query 64 CG----TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 15908 TTATGCTGTTAGAATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGT 15849
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179
|||||||||||||||||||||||||||||||||| |||||||| |||| | ||| |||
Sbjct 15848 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCCCCGTTAACCGTCACTGCCACGGT 15789
Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239
| |||| || | |||| ||||||| ||||||| |||||| |||||||| |||||| |
Sbjct 15788 AAGCCAATACCATACCGTCGAAAGCTGATAGGTCAGAAACTTGAATGATTTATCGCCAG- 15730
Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA---GGAGCCCCGAAGGGC-- 294
| | ||||||| | | ||||||| | ||||||||| | | || |
Sbjct 15729 TTTGTACTCTGCGATTTGCTTAGTTATTGTAAATCACCAACTTTTATGCTTTAAAAACAT 15670
Query 295 --GTTGGTTTTTTATCTAATAAATACACCCCTTCCGA---AGTCGGGGTTTTTAGCATGT 349
||||||||||||||||||||| | | |||| | ||| | | | | |||||
Sbjct 15669 ATATTGGTTTTTTATCTAATAAATGCTTCTCTTCTAAAACAGTTGAGAATGTGCTCATGT 15610
Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGG--TACTATCAAATAAACGATA 407
||||||||||||||||||||||||||||||||| || | | ||||||| |||| |||
Sbjct 15609 ATTAGCTCTAGAATTACCACGGTTATCCATGTA--AACGTTTGTTATCAAAGAAACTATA 15552
Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467
|||| | |||||||||||| ||||||| ||||||| | | |||||||||||| |||||
Sbjct 15551 ACTGTTGTAATGAGCCATTTGCAGTTTTACTGTAT-TTTCGTTTATACTTAGACGTGCAT 15493
Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||| ||||||||||||||||||||||||
Sbjct 15492 GGCTTAATCTTTAAGACAAGCATATGACTACTGGCAG 15456
Score = 80.6 bits (88), Expect = 8e-13
Identities = 83/107 (78%), Gaps = 4/107 (4%)
Strand=Plus/Minus
Query 337 GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCA 396
||||||| ||| ||| ||||||||||||||||||||||||| || | | |||||
Sbjct 14401 GTTTTTA---TGTGTTAACTCTAGAATTACCACGGTTATCCATTTAATCGTTTGTTATCA 14345
Query 397 AATAAACGATAACTGAT-TTAATGAGCCATTCGCAGTTTCACTGTAT 442
|| ||| ||||||| | | ||||||||||| | ||||| | ||||
Sbjct 14344 AAAAAAATATAACTGTTGTAAATGAGCCATTGGTAGTTTTGCAGTAT 14298
>seq52979
Length=4639
Score = 237 bits (262), Expect = 5e-60
Identities = 235/298 (79%), Gaps = 17/298 (6%)
Strand=Plus/Plus
Query 220 TTGAATGAACCATCGCCGGCT--CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACC 277
|||||||| |||||| ||| || | |||||||| | ||||||||||| |||||||
Sbjct 3677 TTGAATGATTTATCGCCAGCTTTCA---CTATGCGATTTGCTAAGTTATTATAAATCACC 3733
Query 278 AAGGAGCCCCG-----AAGG--GCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAA 330
|| | ||| || |||| |||||||||||||||||| | |||| |||
Sbjct 3734 AACTTCCATACTTTAAAAGCATGCATTGGCTTTTTATCTAATAAATACTTCTCTTCTGAA 3793
Query 331 ---GTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG 387
|| | | | ||||||||||||||||||||||||||||||||||| || |
Sbjct 3794 ACAGTTGAGAACGTGCTCATGTATTAGCTCTAGAATTACCACGGTTATCCATTTAAAACT 3853
Query 388 GTACT-ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT 446
| || ||||||||||| ||||||| |||||||||||||| ||||||| ||||||| ||
Sbjct 3854 TTTCTTATCAAATAAACTATAACTGTTTTAATGAGCCATTTGCAGTTTAACTGTATT-AT 3912
Query 447 TGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3913 CGCTTATACTTAGACATGCATGGCTTAATCTTTAAGACAAGCATATGACTACTGGCAG 3970
>seq72915
Length=9929
Score = 235 bits (260), Expect = 2e-59
Identities = 160/180 (89%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 56 TACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 6939 TACCTCCCCGCGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 6998
Query 116 CCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCA 175
||||||||||||||||||||||||||||| ||||| ||||||| |||||||| | ||||
Sbjct 6999 CCGTTTCTCAGGCTCCCTCTCCGGAATCGTACCCTGATTCCCCATTACCCGTGGTCACCA 7058
Query 176 TGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGC 235
|||||||| | ||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 7059 TGGTAGGCGCAGAAAGTACCATCGAAAGTTGATAGGGCAGACATTCGAATGCGTCATCGC 7118
>seq31692
Length=8460
Score = 168 bits (186), Expect = 2e-39
Identities = 170/215 (79%), Gaps = 7/215 (3%)
Strand=Plus/Plus
Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAG-CATGTAT 351
||||||||| ||| |||||| ||| | | || || ||| | | | | | |||||||
Sbjct 251 GTTGGTTTTGG-TCTGATAAATGCACTCATCCCCGGAGGTCAGCGCTCATCGGCATGTAT 309
Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACGATAAC 409
||||||||||||||| || ||||||| ||| | || | | |||| ||| |||||
Sbjct 310 TAGCTCTAGAATTACGACAGTTATCCGAGTAACGGTGGGAGCGACCAAAGGAACCATAAC 369
Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469
||||||||||||||||||||||||||||||| | | | ||||||||||||||| |
Sbjct 370 TGATTTAATGAGCCATTCGCAGTTTCACTGTCATGCCCGTGTGTACTTAGACATGCATAG 429
Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||| ||||||||||
Sbjct 430 CTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 463
>seq70794
Length=8325
Score = 143 bits (158), Expect = 8e-32
Identities = 85/89 (96%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 89 GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC 60
Query 149 CTAATTCCCCGTTACCCGTTGATACCATG 177
|| |||||||||||||||| | ||||||
Sbjct 61 CTGATTCCCCGTTACCCGTGGTCACCATG 89
>seq160560
Length=710
Score = 136 bits (150), Expect = 1e-29
Identities = 97/110 (88%), Gaps = 1/110 (1%)
Strand=Plus/Plus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454
|||| ||| |||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 3 CAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTCACGCCCGTGTGTA 62
Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 63 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 111
>seq34660
Length=44406
Score = 100 bits (110), Expect = 9e-19
Identities = 104/139 (75%), Gaps = 17/139 (12%)
Strand=Plus/Plus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403
|||||| |||||||| |||| | ||| ||||||| |||||| |||
Sbjct 36021 GCATGTGTTAGCTCTGGAATCATCACAGTTATCC---TAGTAA--------------AAC 36063
Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463
|||||||||| |||||||||||| |||||||||||| | || | ||||||||||
Sbjct 36064 CATAACTGATTCAATGAGCCATTCACAGTTTCACTGTCACGCCTGTGTGTACTTAGACAC 36123
Query 464 GCATGGCTTAATCTTTGAG 482
|||||||||||||||| ||
Sbjct 36124 GCATGGCTTAATCTTTCAG 36142
>seq128558
Length=1186
Score = 91.5 bits (100), Expect = 4e-16
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487
||||||||||||| | | | |||||||||||||||||||||||||||||||||||
Sbjct 1186 GCAGTTTCACTGTCACGCCCGTGTGTACTTAGACATGCATGGCTTAATCTTTGAGACAAG 1127
Query 488 CATATGACTACTGGCAG 504
|||||| ||||||||||
Sbjct 1126 CATATG-CTACTGGCAG 1111
>seq140390
Length=989
Score = 84.2 bits (92), Expect = 7e-14
Identities = 50/51 (98%), Gaps = 1/51 (2%)
Strand=Plus/Minus
Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 989 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1507589628928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |