Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq10737 93.3 3e-14 seq49828 84.2 2e-11 seq7215 84.2 2e-11 >seq10737 Length=39522 Score = 93.3 bits (102), Expect = 3e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || || || || |||||||| ||||||||||| || ||||| | ||||| || | Sbjct 18991 CATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGTGCCCTCTGCTCTTCCTT 18932 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||| || || || |||||||| ||||||||||| ||||| || |||||||| Sbjct 18931 CCCGGTGTTCTTCTTCAGATCGAGGAATTCAAAGATGTCCATGTGCCAGGGCTCCAGGTA 18872 Query 66460 GATGGCGAA 66468 ||||||||| Sbjct 18871 GATGGCGAA 18863 >seq49828 Length=5021 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||||| | || || || |||||||| |||||||||| Sbjct 4518 TGGAGCGATTCAGCCAAGAAGTACAAGTCACAGAAGCACGCTGTTTCTATGGCTTCCAGA 4577 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 ||||||||||||| | || || || ||||| ||| | || || ||||| || || | || Sbjct 4578 TTGCCATGGAGAACATTCATTCAGAAATGTATAGTTTACTTATTGATACTTATATTAAGG 4637 Query 61376 A 61376 | Sbjct 4638 A 4638 >seq7215 Length=34700 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||||| | || || || |||||||| |||||||||| Sbjct 18771 TGGAGCGATTCAGCCAAGAAGTACAAGTCACAGAAGCACGCTGTTTCTATGGCTTCCAGA 18712 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 ||||||||||||| | || || || ||||| ||| | || || ||||| || || | || Sbjct 18711 TTGCCATGGAGAACATTCATTCAGAAATGTATAGTTTACTTATTGATACTTATATTAAGG 18652 Query 61376 A 61376 | Sbjct 18651 A 18651 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||||| | || || || |||||||| |||||||||| Sbjct 22719 TGGAGCGATTCAGCCAAGAAGTACAAGTCACAGAAGCACGCTGTTTCTATGGCTTCCAGA 22660 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 ||||||||||||| | || || || ||||| ||| | || || ||||| || || | || Sbjct 22659 TTGCCATGGAGAACATTCATTCAGAAATGTATAGTTTACTTATTGATACTTATATTAAGG 22600 Query 61376 A 61376 | Sbjct 22599 A 22599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396666433555520