Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq5159 340 3e-91 SEQ66656 109 9e-22 seq168869 102 1e-19 >seq5159 Length=2785 Score = 340 bits (376), Expect = 3e-91 Identities = 233/263 (89%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2252 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 2193 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 2192 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 2133 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 2132 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 2073 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | | |||||||| ||| Sbjct 2072 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGG 2013 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| ||| ||||||| Sbjct 2012 CCCCGCTTTCACGGTCTGTATTC 1990 >SEQ66656 Length=4733 Score = 109 bits (120), Expect = 9e-22 Identities = 74/82 (90%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAA--CCCAGCTCACGTTCCCT 89 |||||| || ||||||||||||||||| ||||||| ||||| ||||||||| ||| ||| Sbjct 3290 CATCAGCAGAGTAAAACTAACCTGTCTTATGACGGCCTAAAAACCCAGCTCATGTTTCCT 3231 Query 90 ATTAGTGGGTGAACAATCCAAC 111 |||||||||||||||||||||| Sbjct 3230 ATTAGTGGGTGAACAATCCAAC 3209 >seq168869 Length=2751 Score = 102 bits (112), Expect = 1e-19 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 50 AACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCA 109 ||||||||||| || ||||||||| |||||||||||||||| |||||||| ||||||| | Sbjct 1498 AACCTGTCTCACGATGGTCTAAACACAGCTCACGTTCCCTAGTAGTGGGTAAACAATCTA 1557 Query 110 ACGCTTACCGAATTCTGCTTC 130 |||||| ||||| |||||| Sbjct 1558 ACGCTTGGTGAATTTTGCTTC 1578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 850355441280