Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq5159 414 3e-113 seq202214 161 3e-37 SEQ79516 150 6e-34 seq168869 89.7 2e-15 >seq5159 Length=2785 Score = 414 bits (458), Expect = 3e-113 Identities = 363/448 (81%), Gaps = 17/448 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| ||||||| |||| |||| | ||||||||||||||||||| | Sbjct 1956 CTTCTGCTCCGCGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 1897 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||||| |||| | ||| || Sbjct 1896 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGACGCTGTCCCCGGAGCGGGTC 1837 Query 127 G------GCCCGCGAAGGAC-CTTAACGCCAGAAAATGG------TCGGTGAAGACCAGT 173 | ||||||| || | ||| ||||||| | |||| | || Sbjct 1836 GCGCCCGGCCCGCGCCGGGCGCTTGGAGCCAGAAGCGAGAGCCCCTCGGGGCTCGCCCCC 1777 Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC-GCCGAA 232 |||| ||| | ||||| |||||||||| || ||||||||||||||| || ||| Sbjct 1776 -CCGCCTCACCGGGTAAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCAGCCCGG 1718 Query 233 ACGG--CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAA 290 ||| |||||||||||||||| ||||||| ||| |||||| | | |||||||||||| Sbjct 1717 GCGGGCCTCCCACTTATTCTACGCCTCTCATGTCTCTTCACAGGGCCAGACTAGAGTCAA 1658 Query 291 GCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1657 GCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 1598 Query 351 CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 410 ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1597 CGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAAT 1538 Query 411 TAGATGACGAGGCATTTGGCTACCTTAA 438 |||||||||||||||||||||| |||| Sbjct 1537 TAGATGACGAGGCATTTGGCTATGTTAA 1510 >seq202214 Length=23969 Score = 161 bits (178), Expect = 3e-37 Identities = 191/255 (75%), Gaps = 18/255 (7%) Strand=Plus/Minus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC-GCCGAA-ACGGC 237 ||||||| ||||||| |||| ||| || ||| ||||||||||| | || | | || | Sbjct 11930 TCATTGACTAAGTAACAAAATGATCAGAGTAATGGTATTTCACCAGTAGCAGTAGAC--C 11873 Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 |||||||||||| | ||||| | || |||||| | | || ||||||| |||||||| Sbjct 11872 TCCCACTTATTCCATGCCTCTTACGTTTCTTCACAGGGCCAGATTAGAGTCCAGCTCAAC 11813 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 || ||||||||| ||| |||| || |||||| | ||||||| | | ||||||| |||| Sbjct 11812 AGTGTCTTCTTTACCCAGTGATCCCCCCAAGCTC-TTCCCTT-GATATGGTTTCATTAGA 11755 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||||| ||||| |||||||| |||| | ||| ||||||||||| Sbjct 11754 TAGTAGATGAGGACAATGGGAATC------------TCATATGTATCAATAATTAGATGA 11707 Query 418 CGAGGCATTTGGCTA 432 |||||||||| ||| Sbjct 11706 TGAGGCATTTGACTA 11692 >SEQ79516 Length=11374 Score = 150 bits (166), Expect = 6e-34 Identities = 89/93 (96%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 10831 GACTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACATTC 10772 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||| ||||||||| Sbjct 10771 AGAGCACTGGGCAGAAATCACATCGCGTCAACA 10739 >seq168869 Length=2751 Score = 89.7 bits (98), Expect = 2e-15 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 46 CCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 ||||||||||||||||||||||||| |||| ||| ||| ||||| ||||||||||||||| Sbjct 1586 CCTTAGGACACCTGCGTTATGGTTTGACAGGTGTACCGTCCCAGTCAAACTCCCCACCTG 1645 Query 106 AC 107 || Sbjct 1646 AC 1647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1627459290240