Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq391991 93.3 3e-14 seq206962 87.8 1e-12 >seq391991 Length=799 Score = 93.3 bits (102), Expect = 3e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || || || || |||||||| ||||||||||| || || || | ||||| || | Sbjct 297 CATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGGGCCCTCTGCTCTTCCTT 238 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||| || || || ||||||||||||||||||||| ||||| || |||||||| Sbjct 237 CCCGGTGTTCTTCTTCAGGTCGAGGAACTCAAAGATGTCCAAGTGCCAGGGCTCCAGGTA 178 Query 66460 GATGGCGAA 66468 |||||| || Sbjct 177 GATGGCAAA 169 >seq206962 Length=5195 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||||| | || || || |||||||| |||||||||| Sbjct 3702 TGGAGCGATTCAGCCAAGAAGTACAAGTCACAGAAGCACGCTGTTTCTATGGCTTCCAGA 3761 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 ||||||||||||| | || || || ||||| ||| | || || ||||| ||||| | || Sbjct 3762 TTGCCATGGAGAACATTCATTCAGAAATGTATAGTTTACTTATTGATACTTACATTAAGG 3821 Query 61376 A 61376 | Sbjct 3822 A 3822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395274303483200