Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13]
81 sequences; 2,640,792,433 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq60 192 9e-47
seq78 168 1e-39
seq46 159 5e-37
seq40 156 6e-36
seq72 145 1e-32
seq52 84.2 3e-14
seq70 77.0 5e-12
>seq60
Length=24207467
Score = 192 bits (212), Expect = 9e-47
Identities = 186/234 (79%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||| |
Sbjct 5217655 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 5217598
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | || ||||||||| | ||||||||||||| ||||| | ||
Sbjct 5217597 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 5217538
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| |||||||||| ||| | | || || ||| ||||||||||||||||||
Sbjct 5217537 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 5217478
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 5217477 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 5217425
Score = 125 bits (138), Expect = 1e-26
Identities = 147/195 (75%), Gaps = 3/195 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||||||||| ||| | ||| |||||| ||||| |
Sbjct 5222851 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGTCCCGCACTTACTGAGAATT-C 5222794
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|| ||| | | || |||||||| | ||||||||||||| ||||| || ||
Sbjct 5222793 CTTGTTCATGGGGAATAATTGCAACCCCCGATCCCCATCACGAATGGGGTTCAACGAGTT 5222734
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| |||||||||| ||| | | || ||||| |||||||||||| |||||
Sbjct 5222733 ACCCACACCTGTCGGCGTAGGGTAGACACATGTTGAGCCAGTCAGTGTAGCGCACGTGCA 5222674
Query 180 GCCCAGAACATCTAA 194
|||| | ||||||||
Sbjct 5222673 GCCCCGGACATCTAA 5222659
>seq78
Length=264820526
Score = 168 bits (186), Expect = 1e-39
Identities = 181/234 (77%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||| ||||| ||||| || |||||| |||||| |
Sbjct 76621326 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCTGCACTTACTGGGAATT-C 76621383
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | || ||||||||| | ||||| |||| || |||||| | ||
Sbjct 76621384 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCTATCATGAATGGGTTTCAATGGGTT 76621443
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| |||||||||| ||| | | || || ||| |||||||||| | |||||
Sbjct 76621444 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCACACGTGCA 76621503
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
| || | |||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 76621504 GACCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTTGGGTGGC 76621556
Score = 141 bits (156), Expect = 1e-31
Identities = 177/237 (75%), Gaps = 12/237 (5%)
Strand=Plus/Minus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
|||||||| |||||| || |||| | |||||| ||||| ||| |||||| |||||| ||
Sbjct 105045187 TACAAAGGCTAGGGACTTAATCAATGAGAGCTT-ATGACCCGCACTTACTGGGAATT-CC 105045130
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAGA 117
||||| | | || ||||| ||| | ||||||||||| |||| ||||| |
Sbjct 105045129 TCGTTCATGGGGAATAATTGGAATACCCAATCCCCATCAC----AAATGGGGTTCAACGG 105045074
Query 118 -TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176
||||| | ||||||||| ||| | | || | ||| |||||| |||| ||||
Sbjct 105045073 GTTACCTGCACCTGTCGGTATAGGGTAGATACACACTGACCCAGTCAGTGAAGCGTGCGT 105045014
Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|| |||| | |||||||||||||||||||||||||||||| ||||| || | || ||
Sbjct 105045013 GCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCCAGTAGC 105044958
>seq46
Length=49293797
Score = 159 bits (176), Expect = 5e-37
Identities = 174/226 (77%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||| || ||||| || |||| || ||||| ||||||||| |||||| |||| |||
Sbjct 7968837 GTACAAAGAGCTGGGACTTAATCAATGCAAGCTT-ATGACTCGCACTTACT-GGAAATTC 7968780
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119
||| || | | || ||||||||| ||||||||||||| ||||| || ||
Sbjct 7968779 CTCATTCATGGGGAATAATTGCAATCCCTGATCCCCATCACGAATGGGGTTCAACAGGTT 7968720
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| ||||||| || ||| | | || || ||| |||||||||| || ||||
Sbjct 7968719 ACCCGCACCTGTCAGCATAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCACGTGTGCA 7968660
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
|||| | |||||||||||||||||||||||||||||| ||||| ||
Sbjct 7968659 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 7968615
Score = 150 bits (166), Expect = 3e-34
Identities = 177/234 (76%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||| |||||| ||||| ||| |||||| ||| ||||
Sbjct 28357365 GTACAAAGGGCAGGGACTTAATCAACATGAGCTT-ATGACCCGCACTTACTGGGA-TTTC 28357308
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119
||| || | | | ||||||||| ||||||||||| ||| || | | ||
Sbjct 28357307 CTCATTCATGGGGATTAATTGCAATCCCTGATCCCCATCACATATGGGGTTCAACGGGTT 28357248
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| |||||||||| ||| | | || || ||| |||||||||||| |||||
Sbjct 28357247 ACCCACACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCACGTGCA 28357188
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||| ||||||||||||||||||||||||| ||||| || |||||
Sbjct 28357187 GCCCCGGACATGTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 28357135
>seq40
Length=78824398
Score = 156 bits (172), Expect = 6e-36
Identities = 181/238 (76%), Gaps = 12/238 (5%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || |||| |||||||| ||||||||| |||||| |||| |||
Sbjct 38062553 GTACAAAGGGCAGGGACTTAATCAATGCGAGCTT-ATGACTCGCACTTACT-GGAAATTC 38062610
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAA-A 115
|| ||| | | || ||||||||| | ||||||||||| |||| ||||| |
Sbjct 38062611 CTTGTTCATGGGGAATAATTGCAATCCCCAATCCCCATCAC----AAATGGGGTTCAACA 38062666
Query 116 GATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175
| ||||| | || ||| ||| ||| | | || || ||| |||||| ||||| |
Sbjct 38062667 GGTTACCGGCACGTGTTGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGCAGCGCATG 38062726
Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
||| |||| |||||||||||| |||||||||||||| || ||||||||| |||||
Sbjct 38062727 TGCAGCCCCAGACATCTAAGGGCTTCACAGACCTGTTAATG-CTCAAACTTAGGTGGC 38062783
Score = 123 bits (136), Expect = 4e-26
Identities = 153/204 (75%), Gaps = 4/204 (2%)
Strand=Plus/Minus
Query 31 GCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCT 90
|||| ||||||| | |||||| |||||| |||| || | || ||||||||| |
Sbjct 41500525 GCTT-ATGACTCACACTTACTGGGAATT-CCTCATTCTTGGGGAATAATTGCAATCCCCA 41500468
Query 91 ATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACT 149
||||||||||||| |||| | ||||||| ||||||||| ||| | | ||
Sbjct 41500467 ATCCCCATCACGAATGGGGCTCAACGGGTTACCCGCACCTGTCGGTGTAGGCTAGACACA 41500408
Query 150 CGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 209
|| ||| |||||||||| || ||||| |||| | |||||||||||||||||||||||
Sbjct 41500407 CGCTGAGCCAATCAGTGTAGTGCACGTGCAGCCCTGGACATCTAAGGGCATCACAGACCT 41500348
Query 210 GTTATTGCCTCAAACTTCCGTGGC 233
||||||| ||||| || |||||
Sbjct 41500347 GTTATTG-CTCAATCTCGGGTGGC 41500325
>seq72
Length=50748683
Score = 145 bits (160), Expect = 1e-32
Identities = 178/237 (75%), Gaps = 12/237 (5%)
Strand=Plus/Minus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
|||||||||||||||| || |||||| |||||| ||||| ||| ||||||||||||| ||
Sbjct 27218447 TACAAAGGGCAGGGACTTAATCAACGTGAGCTT-ATGACCCGCACTTACTAGGAATT-CC 27218390
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAGA 117
|| || | | || ||||||||| | |||| |||||| |||| ||||| |
Sbjct 27218389 TCATTCATGGGGAATAATTGCAATCCCCGATCCACATCAC----AAATGGGGTTCAATGG 27218334
Query 118 -TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176
|||||| | ||||| || ||| | | || || || | |||||||||| | | |
Sbjct 27218333 GTTACCCACAACTGTCAGCGTAGGGCAGACACACGCCGAGTCAGTCAGTGTAGCACACAT 27218274
Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|| |||| |||||||||||||||||||||||||||||| ||||| || | || ||
Sbjct 27218273 GCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCCAGTAGC 27218218
>seq52
Length=57331580
Score = 84.2 bits (92), Expect = 3e-14
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220
||||||||| ||| |||| |||| | |||||||||||||||||||||||||||||| |||
Sbjct 21999250 TCAGTGTAGTGCGTGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 21999308
Query 221 AAACTTCCGTGGC 233
|| || |||||
Sbjct 21999309 AATCTCGGGTGGC 21999321
>seq70
Length=183555969
Score = 77.0 bits (84), Expect = 5e-12
Identities = 64/77 (83%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220
|||||||||| | | ||||||| | ||| |||||||||||||||||||||||||| |||
Sbjct 16568882 TCAGTGTAGCACACAGGCGGCCCTGGACACCTAAGGGCATCACAGACCTGTTATTG-CTC 16568824
Query 221 AAACTTCCGTGGCCTAA 237
|| || |||||| ||
Sbjct 16568823 AATCTCAGGTGGCCGAA 16568807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751999409915
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