Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq60 192 9e-47 seq78 168 1e-39 seq46 159 5e-37 seq40 156 6e-36 seq72 145 1e-32 seq52 84.2 3e-14 seq70 77.0 5e-12 >seq60 Length=24207467 Score = 192 bits (212), Expect = 9e-47 Identities = 186/234 (79%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||| | Sbjct 5217655 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 5217598 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 5217597 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 5217538 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||||||| ||| | | || || ||| |||||||||||||||||| Sbjct 5217537 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 5217478 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 5217477 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 5217425 Score = 125 bits (138), Expect = 1e-26 Identities = 147/195 (75%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||| | ||| |||||| ||||| | Sbjct 5222851 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGTCCCGCACTTACTGAGAATT-C 5222794 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 || ||| | | || |||||||| | ||||||||||||| ||||| || || Sbjct 5222793 CTTGTTCATGGGGAATAATTGCAACCCCCGATCCCCATCACGAATGGGGTTCAACGAGTT 5222734 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| |||||||||| ||| | | || ||||| |||||||||||| ||||| Sbjct 5222733 ACCCACACCTGTCGGCGTAGGGTAGACACATGTTGAGCCAGTCAGTGTAGCGCACGTGCA 5222674 Query 180 GCCCAGAACATCTAA 194 |||| | |||||||| Sbjct 5222673 GCCCCGGACATCTAA 5222659 >seq78 Length=264820526 Score = 168 bits (186), Expect = 1e-39 Identities = 181/234 (77%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| || |||||| |||||| | Sbjct 76621326 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCTGCACTTACTGGGAATT-C 76621383 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| |||| || |||||| | || Sbjct 76621384 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCTATCATGAATGGGTTTCAATGGGTT 76621443 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||||||| ||| | | || || ||| |||||||||| | ||||| Sbjct 76621444 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCACACGTGCA 76621503 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 | || | |||||||||||||||||||||||||||||| ||||| ||| ||||| Sbjct 76621504 GACCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTTGGGTGGC 76621556 Score = 141 bits (156), Expect = 1e-31 Identities = 177/237 (75%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||||| |||||| || |||| | |||||| ||||| ||| |||||| |||||| || Sbjct 105045187 TACAAAGGCTAGGGACTTAATCAATGAGAGCTT-ATGACCCGCACTTACTGGGAATT-CC 105045130 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAGA 117 ||||| | | || ||||| ||| | ||||||||||| |||| ||||| | Sbjct 105045129 TCGTTCATGGGGAATAATTGGAATACCCAATCCCCATCAC----AAATGGGGTTCAACGG 105045074 Query 118 -TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||||| | ||||||||| ||| | | || | ||| |||||| |||| |||| Sbjct 105045073 GTTACCTGCACCTGTCGGTATAGGGTAGATACACACTGACCCAGTCAGTGAAGCGTGCGT 105045014 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 || |||| | |||||||||||||||||||||||||||||| ||||| || | || || Sbjct 105045013 GCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCCAGTAGC 105044958 >seq46 Length=49293797 Score = 159 bits (176), Expect = 5e-37 Identities = 174/226 (77%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| || ||||| || |||| || ||||| ||||||||| |||||| |||| ||| Sbjct 7968837 GTACAAAGAGCTGGGACTTAATCAATGCAAGCTT-ATGACTCGCACTTACT-GGAAATTC 7968780 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 ||| || | | || ||||||||| ||||||||||||| ||||| || || Sbjct 7968779 CTCATTCATGGGGAATAATTGCAATCCCTGATCCCCATCACGAATGGGGTTCAACAGGTT 7968720 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||||||| || ||| | | || || ||| |||||||||| || |||| Sbjct 7968719 ACCCGCACCTGTCAGCATAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCACGTGTGCA 7968660 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||| | |||||||||||||||||||||||||||||| ||||| || Sbjct 7968659 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 7968615 Score = 150 bits (166), Expect = 3e-34 Identities = 177/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| |||||| ||||| ||| |||||| ||| |||| Sbjct 28357365 GTACAAAGGGCAGGGACTTAATCAACATGAGCTT-ATGACCCGCACTTACTGGGA-TTTC 28357308 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 ||| || | | | ||||||||| ||||||||||| ||| || | | || Sbjct 28357307 CTCATTCATGGGGATTAATTGCAATCCCTGATCCCCATCACATATGGGGTTCAACGGGTT 28357248 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| |||||||||| ||| | | || || ||| |||||||||||| ||||| Sbjct 28357247 ACCCACACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCACGTGCA 28357188 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||| ||||||||||||||||||||||||| ||||| || ||||| Sbjct 28357187 GCCCCGGACATGTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 28357135 >seq40 Length=78824398 Score = 156 bits (172), Expect = 6e-36 Identities = 181/238 (76%), Gaps = 12/238 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| |||||||| ||||||||| |||||| |||| ||| Sbjct 38062553 GTACAAAGGGCAGGGACTTAATCAATGCGAGCTT-ATGACTCGCACTTACT-GGAAATTC 38062610 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAA-A 115 || ||| | | || ||||||||| | ||||||||||| |||| ||||| | Sbjct 38062611 CTTGTTCATGGGGAATAATTGCAATCCCCAATCCCCATCAC----AAATGGGGTTCAACA 38062666 Query 116 GATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 | ||||| | || ||| ||| ||| | | || || ||| |||||| ||||| | Sbjct 38062667 GGTTACCGGCACGTGTTGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGCAGCGCATG 38062726 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| |||| |||||||||||| |||||||||||||| || ||||||||| ||||| Sbjct 38062727 TGCAGCCCCAGACATCTAAGGGCTTCACAGACCTGTTAATG-CTCAAACTTAGGTGGC 38062783 Score = 123 bits (136), Expect = 4e-26 Identities = 153/204 (75%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 31 GCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCT 90 |||| ||||||| | |||||| |||||| |||| || | || ||||||||| | Sbjct 41500525 GCTT-ATGACTCACACTTACTGGGAATT-CCTCATTCTTGGGGAATAATTGCAATCCCCA 41500468 Query 91 ATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACT 149 ||||||||||||| |||| | ||||||| ||||||||| ||| | | || Sbjct 41500467 ATCCCCATCACGAATGGGGCTCAACGGGTTACCCGCACCTGTCGGTGTAGGCTAGACACA 41500408 Query 150 CGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 209 || ||| |||||||||| || ||||| |||| | ||||||||||||||||||||||| Sbjct 41500407 CGCTGAGCCAATCAGTGTAGTGCACGTGCAGCCCTGGACATCTAAGGGCATCACAGACCT 41500348 Query 210 GTTATTGCCTCAAACTTCCGTGGC 233 ||||||| ||||| || ||||| Sbjct 41500347 GTTATTG-CTCAATCTCGGGTGGC 41500325 >seq72 Length=50748683 Score = 145 bits (160), Expect = 1e-32 Identities = 178/237 (75%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||||||||||||| || |||||| |||||| ||||| ||| ||||||||||||| || Sbjct 27218447 TACAAAGGGCAGGGACTTAATCAACGTGAGCTT-ATGACCCGCACTTACTAGGAATT-CC 27218390 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAGA 117 || || | | || ||||||||| | |||| |||||| |||| ||||| | Sbjct 27218389 TCATTCATGGGGAATAATTGCAATCCCCGATCCACATCAC----AAATGGGGTTCAATGG 27218334 Query 118 -TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||||| | ||||| || ||| | | || || || | |||||||||| | | | Sbjct 27218333 GTTACCCACAACTGTCAGCGTAGGGCAGACACACGCCGAGTCAGTCAGTGTAGCACACAT 27218274 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 || |||| |||||||||||||||||||||||||||||| ||||| || | || || Sbjct 27218273 GCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCCAGTAGC 27218218 >seq52 Length=57331580 Score = 84.2 bits (92), Expect = 3e-14 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||||||||| ||| |||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 21999250 TCAGTGTAGTGCGTGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 21999308 Query 221 AAACTTCCGTGGC 233 || || ||||| Sbjct 21999309 AATCTCGGGTGGC 21999321 >seq70 Length=183555969 Score = 77.0 bits (84), Expect = 5e-12 Identities = 64/77 (83%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||| | | ||||||| | ||| |||||||||||||||||||||||||| ||| Sbjct 16568882 TCAGTGTAGCACACAGGCGGCCCTGGACACCTAAGGGCATCACAGACCTGTTATTG-CTC 16568824 Query 221 AAACTTCCGTGGCCTAA 237 || || |||||| || Sbjct 16568823 AATCTCAGGTGGCCGAA 16568807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999409915