Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq78 104 1e-20 seq60 95.1 7e-18 seq46 87.8 1e-15 seq40 77.0 2e-12 seq75 75.2 6e-12 seq54 71.6 8e-11 >seq78 Length=264820526 Score = 104 bits (114), Expect = 1e-20 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| |||| |||| | ||||| |||| Sbjct 76621857 GAACCCAAAGACTTTGGTTTCCCGGAAGTTGCCCAGCGGGTCATAGGAATAACGCCGCCG 76621916 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 ||| |||||| |||| |||| ||| ||||||||||||||||||||||||| Sbjct 76621917 GATTGCTAGTCAGCATCATTTATGGTCGGAACTACGACGGTATCTGATCGTCTTC 76621971 Score = 104 bits (114), Expect = 1e-20 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| |||| |||| | ||||| |||| Sbjct 76638770 GAACCCAAAGACTTTGGTTTCCCGGAAGTTGCCCAGCGGGTCATAGGAATAACGCCGCCG 76638829 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 ||| |||||| |||| |||| ||| ||||||||||||||||||||||||| Sbjct 76638830 GATTGCTAGTCAGCATCATTTATGGTCGGAACTACGACGGTATCTGATCGTCTTC 76638884 >seq60 Length=24207467 Score = 95.1 bits (104), Expect = 7e-18 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||| ||||||||||| |||| || ||| |||| || | |||| |||| ||| Sbjct 5217124 GAACTCAAAGACTTTGGTTTCCCGGAAGCTGCCCAGAGGGTCATGGGAATAATGCTGCCA 5217065 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| ||||| ||| ||||| ||||||||||||||||||||| Sbjct 5217064 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACAACGGTATCTGATCGTCTTCGA 5217008 >seq46 Length=49293797 Score = 87.8 bits (96), Expect = 1e-15 Identities = 91/118 (77%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGAT-AACATCGCC 59 |||||||||||||||| |||| | ||| |||| ||| |||| || |||| |||| Sbjct 7962821 GAACCCAAAGACTTTGGTTTCCCAGAAGCTGCCTGGCGGGTCATGGGAATAAACACCGCC 7962762 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||| ||| ||||| ||| |||| || |||||||||| |||||||| Sbjct 7962761 AGATCGCTAGTCGACATCGTTTATGGTCGGAACTATGATGGTATCTGATAGTCTTCGA 7962704 Score = 80.6 bits (88), Expect = 1e-13 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||| |||| | || | ||| |||| |||| |||| | |||| || Sbjct 28356831 GAACCCAAAGATTTTGGTCTCCCAGAAGCTGCCCAGCGGGTCATAGGAATAATGCTGCTG 28356772 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| |||| |||| |||||||| ||||||||||| ||| || Sbjct 28356771 GATCGCTAGTCGGCATCATTTATGGTTGGAACTACGACAGTATCTGATCGCCTTTGA 28356715 >seq40 Length=78824398 Score = 77.0 bits (84), Expect = 2e-12 Identities = 87/117 (74%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| | || | || ||||||||| ||||| | || Sbjct 38063084 GAACCCAAAGACTTTGGTTTCCCAAAAACTCCCCAGCGAGTCATGGGAATAACGCCTCCG 38063143 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||| |||| ||| | ||||| | |||||||||| |||||||| Sbjct 38063144 GACAGCTAGTTGGCATCATTTATGGTCAGAACTACTATGGTATCTGATTGTCTTCGA 38063200 >seq75 Length=82161327 Score = 75.2 bits (82), Expect = 6e-12 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 49 ATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGAT 108 |||||||| | |||| ||||||||||| ||||| ||| |||||||||||||||||| Sbjct 6183876 ATAACATCACTGGATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGAT 6183817 Query 109 CGTCTTCGA 117 |||||||| Sbjct 6183816 TGTCTTCGA 6183808 >seq54 Length=44825207 Score = 71.6 bits (78), Expect = 8e-11 Identities = 57/69 (83%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 49 ATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGAT 108 ||||| | || ||| ||||||||||| ||||| ||| | |||||||||||||||||| Sbjct 4831972 ATAACGCCACCGGATTGCTAGTCGGCATCGTTTATGGTCAGAACTACGACGGTATCTGAT 4832031 Query 109 CGTCTTCGA 117 | ||||||| Sbjct 4832032 CATCTTCGA 4832040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278399788590