Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13]
81 sequences; 2,640,792,433 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq78 104 1e-20
seq60 95.1 7e-18
seq46 87.8 1e-15
seq40 77.0 2e-12
seq75 75.2 6e-12
seq54 71.6 8e-11
>seq78
Length=264820526
Score = 104 bits (114), Expect = 1e-20
Identities = 92/115 (80%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||||||||||||||| |||| || ||| |||| |||| |||| | ||||| ||||
Sbjct 76621857 GAACCCAAAGACTTTGGTTTCCCGGAAGTTGCCCAGCGGGTCATAGGAATAACGCCGCCG 76621916
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115
||| |||||| |||| |||| ||| |||||||||||||||||||||||||
Sbjct 76621917 GATTGCTAGTCAGCATCATTTATGGTCGGAACTACGACGGTATCTGATCGTCTTC 76621971
Score = 104 bits (114), Expect = 1e-20
Identities = 92/115 (80%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||||||||||||||| |||| || ||| |||| |||| |||| | ||||| ||||
Sbjct 76638770 GAACCCAAAGACTTTGGTTTCCCGGAAGTTGCCCAGCGGGTCATAGGAATAACGCCGCCG 76638829
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115
||| |||||| |||| |||| ||| |||||||||||||||||||||||||
Sbjct 76638830 GATTGCTAGTCAGCATCATTTATGGTCGGAACTACGACGGTATCTGATCGTCTTC 76638884
>seq60
Length=24207467
Score = 95.1 bits (104), Expect = 7e-18
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||| ||||||||||| |||| || ||| |||| || | |||| |||| |||
Sbjct 5217124 GAACTCAAAGACTTTGGTTTCCCGGAAGCTGCCCAGAGGGTCATGGGAATAATGCTGCCA 5217065
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| ||||||||||| ||||| ||| ||||| |||||||||||||||||||||
Sbjct 5217064 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACAACGGTATCTGATCGTCTTCGA 5217008
>seq46
Length=49293797
Score = 87.8 bits (96), Expect = 1e-15
Identities = 91/118 (77%), Gaps = 1/118 (1%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGAT-AACATCGCC 59
|||||||||||||||| |||| | ||| |||| ||| |||| || |||| ||||
Sbjct 7962821 GAACCCAAAGACTTTGGTTTCCCAGAAGCTGCCTGGCGGGTCATGGGAATAAACACCGCC 7962762
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| ||||||| ||| ||||| ||| |||| || |||||||||| ||||||||
Sbjct 7962761 AGATCGCTAGTCGACATCGTTTATGGTCGGAACTATGATGGTATCTGATAGTCTTCGA 7962704
Score = 80.6 bits (88), Expect = 1e-13
Identities = 88/117 (75%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||| |||| | || | ||| |||| |||| |||| | |||| ||
Sbjct 28356831 GAACCCAAAGATTTTGGTCTCCCAGAAGCTGCCCAGCGGGTCATAGGAATAATGCTGCTG 28356772
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| ||||||||||| |||| |||| |||||||| ||||||||||| ||| ||
Sbjct 28356771 GATCGCTAGTCGGCATCATTTATGGTTGGAACTACGACAGTATCTGATCGCCTTTGA 28356715
>seq40
Length=78824398
Score = 77.0 bits (84), Expect = 2e-12
Identities = 87/117 (74%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||||||||||||||| |||| | || | || ||||||||| ||||| | ||
Sbjct 38063084 GAACCCAAAGACTTTGGTTTCCCAAAAACTCCCCAGCGAGTCATGGGAATAACGCCTCCG 38063143
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|| ||||| ||||| |||| ||| | ||||| | |||||||||| ||||||||
Sbjct 38063144 GACAGCTAGTTGGCATCATTTATGGTCAGAACTACTATGGTATCTGATTGTCTTCGA 38063200
>seq75
Length=82161327
Score = 75.2 bits (82), Expect = 6e-12
Identities = 58/69 (84%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 49 ATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGAT 108
|||||||| | |||| ||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 6183876 ATAACATCACTGGATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGAT 6183817
Query 109 CGTCTTCGA 117
||||||||
Sbjct 6183816 TGTCTTCGA 6183808
>seq54
Length=44825207
Score = 71.6 bits (78), Expect = 8e-11
Identities = 57/69 (83%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 49 ATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGAT 108
||||| | || ||| ||||||||||| ||||| ||| | ||||||||||||||||||
Sbjct 4831972 ATAACGCCACCGGATTGCTAGTCGGCATCGTTTATGGTCAGAACTACGACGGTATCTGAT 4832031
Query 109 CGTCTTCGA 117
| |||||||
Sbjct 4832032 CATCTTCGA 4832040
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278399788590
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |