Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq43 149 3e-33 seq70 136 2e-29 seq40 127 9e-27 seq78 120 1e-24 seq80 118 4e-24 seq38 118 4e-24 >seq43 Length=53437206 Score = 149 bits (164), Expect = 3e-33 Identities = 114/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || || | |||||||||||||||||||||||||||| |||| |||| Sbjct 22239852 GAGCATGAGCGTACGTGCTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAG 22239793 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| | Sbjct 22239792 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACC 22239733 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 22239732 TGGGTATAGGGGCGA 22239718 Score = 96.9 bits (106), Expect = 1e-17 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| |||||| |||||| | || |||| ||||| | | ||||| ||||||| Sbjct 30998457 GAGTCGGGTTGCTTGGGATTGCAGCCCAAAGTGGGTAGTAAACTCCATCTAAGGCTAAAT 30998516 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| | | |||| ||||||| |||| Sbjct 30998517 ACCGGCATGAGACCGATAGTCAACAAGTACCATAAGGAAAAGTTGAAAAGAGCTTTAACG 30998576 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTT 187 |||||||| || ||| |||||| |||| Sbjct 30998577 AGAGAGTTCAAGAGCGTGTGAAACTGTT 30998604 >seq70 Length=183555969 Score = 136 bits (150), Expect = 2e-29 Identities = 107/128 (84%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 ||| || || | |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 139269633 AGCGTATGTGCTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGG 139269574 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||||||||||| ||| || || ||| ||| |||||||||| || || || ||||||| Sbjct 139269573 AAACTCTGGTGAAGGTCCGTAGTGGTCCTGATGTGCAAATCGGTCATCTGATCTGGGTAT 139269514 Query 676 AGGGGCGA 683 |||||||| Sbjct 139269513 AGGGGCGA 139269506 >seq40 Length=78824398 Score = 127 bits (140), Expect = 9e-27 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||||| || | ||||| |||||||||||||||||||||| |||| |||| Sbjct 38053675 GAGCATGAGCATACGTGCTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAG 38053616 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| | ||| || ||| | ||||||||| || || | Sbjct 38053615 CCAGAGGAAACTCTGGTGGAGGTCCATAGCAGTACTGACATGCAAATCGGTCATCTGACC 38053556 Query 669 TGGGTATAGGGGCGA 683 |||||||||||| || Sbjct 38053555 TGGGTATAGGGGTGA 38053541 >seq78 Length=264820526 Score = 120 bits (132), Expect = 1e-24 Identities = 115/145 (79%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 537 TCGGATGGATTTGA-GTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCT 595 ||||| ||| ||| | | ||| ||| || | ||||| ||||||||||||||||||||| Sbjct 104583290 TCGGA--GATGTGAAGCATGAGTATACATGCTAGGACCTGAAAGATGGTGAACTATGCCT 104583347 Query 596 GAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAAT 655 | ||||||||||||||||||||||||||||||| | ||| || ||| |||||||| Sbjct 104583348 GGGCAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGTCCATAGCAGTCCTGATGTGCAAAT 104583407 Query 656 CGATCGTCAAATTTGGGTATAGGGG 680 | || || ||| | |||| ||||| Sbjct 104583408 CAGTCATCCAATCTAGGTAGAGGGG 104583432 Score = 100 bits (110), Expect = 1e-18 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || || | |||||| ||||| ||||||||||| ||| |||| |||| Sbjct 105046919 GAGCATGAGCGTACGTGCTAGGACCCAAAAGAGGGTGAACTATGTCTGGGCAGGGAGAAG 105046978 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||| ||||||||||||||| | ||| || ||| | | |||||| || | || Sbjct 105046979 CCAGAGAAAACTCTGGTGGAGGTCTGTAGCAGTCCTGACATCCAAATCAGTCACCCAACC 105047038 Query 669 TGGGTATAGGGGCGA 683 |||||||||||| || Sbjct 105047039 TGGGTATAGGGGTGA 105047053 Score = 96.9 bits (106), Expect = 1e-17 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || || |||||| | | | | | ||||||| Sbjct 105046082 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATTTCAGGCTAAAT 105046141 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||| ||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 105046142 ACTGGCATGAGACTGATAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAACTTTGAAG 105046201 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || | ||||| Sbjct 105046202 AGAGAGTTCAAGAGGGCATGAAA 105046224 Score = 82.4 bits (90), Expect = 3e-13 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | ||| |||||||||||||| | || ||| | |||| | | ||||| ||||||| Sbjct 104582576 GAGTTGGGTTCTTTGGGAATGCAGCCCAAAGAGGGTGATAAACTCCATCTAAGGCTAAAT 104582635 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||| || || ||| ||| || | ||||| ||||||| |||||| | Sbjct 104582636 ACCGGCACAAGACTGACAGTCTACAGGTACTGTAAGGGAAAGTTGAAAAGAACTTTGAAG 104582695 Query 160 AGAGAGTT 167 |||||||| Sbjct 104582696 AGAGAGTT 104582703 Score = 78.8 bits (86), Expect = 4e-12 Identities = 91/123 (74%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 51 TTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAG 110 ||||||||||||| | || ||| |||||| | ||||| |||||||| || ||| Sbjct 97911471 TTTGGGAATGCAGACCAAAGCGGGTGGTAAACTCTATCTAAGGCTAAATACCAGCACGAG 97911530 Query 111 ACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAA 170 |||||||| ||||||| | | |||| ||||||| |||||| | |||||||| || Sbjct 97911531 ACCGATAGTCAACAAGTACCATAAGGGAAATTTGAAAAGAACTTTGAAGAGAGAGTTCAA 97911590 Query 171 AAG 173 || Sbjct 97911591 GAG 97911593 >seq80 Length=96076944 Score = 118 bits (130), Expect = 4e-24 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||| ||| | || |||| ||||| | | ||||| ||||||| Sbjct 63953506 GAGTCGGGTTGCTTGGGAATGTAGCCCAAAGTGGGTTGTAAACTCCATCTAAGGCTAAAT 63953447 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 63953446 ACTGGCACGAGACCGATAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAACTTTGAAG 63953387 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 63953386 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 63953347 >seq38 Length=209695328 Score = 118 bits (130), Expect = 4e-24 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || |||| |||||| | ||||| ||||||| Sbjct 120585384 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCTGTCTAAGGCTAAAT 120585443 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 120585444 ACCGGCACAAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 120585503 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || | |||||||||| | ||| || || Sbjct 120585504 AGAGAGTTCAAGAGGGCATGAAATTGTTAAGAGGTAAACG 120585543 Score = 118 bits (130), Expect = 4e-24 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||||| ||||||| || | |||||| |||||||||||||||||||| |||| |||| Sbjct 120586219 GAGTACGAGCATATGTGCTAGGACCCCAAAGATGGTGAACTATGCCTATGCAGGGCGAAG 120586278 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| | || ||| ||| ||||||||| || || | Sbjct 120586279 CCAGAGGAAACTCTGGTGGAGGTCCATAGTGGTCCTGATGTGCAAATCAGTCATCCGACC 120586338 Query 669 TGGGTATAGGGGCGA 683 ||||||||| || || Sbjct 120586339 TGGGTATAGAGGTGA 120586353 Score = 87.8 bits (96), Expect = 7e-15 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||| || || | |||||||||||||||| | ||||||||| ||| ||||||||||| Sbjct 116520714 GAGCGTACGTGCTAGGACCCGAAAGATGGTCATCTATGCCTGGGCAGGATGAAGCCAGAG 116520773 Query 615 GAAACTCTGGTGGAGG 630 |||||||||||||||| Sbjct 116520774 GAAACTCTGGTGGAGG 116520789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079998262550