Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq68 170 9e-41 seq40 127 9e-28 seq78 125 3e-27 seq38 114 6e-24 seq73 84.2 1e-14 >seq68 Length=189227759 Score = 170 bits (188), Expect = 9e-41 Identities = 99/102 (97%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 126060625 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 126060684 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||| || |||||||||||||||| |||||||||| Sbjct 126060685 CCGAATCCCCGTCCTGCGGTGGGGCGCGGGAAATGTGGCGTA 126060726 >seq40 Length=78824398 Score = 127 bits (140), Expect = 9e-28 Identities = 87/98 (89%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| | Sbjct 38054700 GGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGTGAGTGAACAGGGAAGAGCCCAGTG 38054641 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGG 98 |||||||||| || ||||||| | | ||| |||||| Sbjct 38054640 CCGAATCCCCATCCTGCGGTGGTGTGTAGGAAATGTGG 38054603 >seq78 Length=264820526 Score = 125 bits (138), Expect = 3e-27 Identities = 89/102 (87%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||||| || || ||||| ||||| ||||| || Sbjct 97911240 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACAGCAAGCGAACATGGAAGGGCCCATCG 97911299 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||| | ||| |||||| ||| |||| |||||| ||| Sbjct 97911300 CCGAATCCCTGTCCCACGGTGGAGCGTGGGAAATGTGGTGTA 97911341 Score = 113 bits (124), Expect = 2e-23 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| Sbjct 104582355 GGAAAAGAAACTAACCAGGATTCCATCAGTAACAGTGAGTGAACAGGGAAGAGCCCAGCG 104582414 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | ||||||| | || || || ||| | ||| | ||| ||| Sbjct 104582415 CTGAATCCCTGTCCTGCAGTTGGGGACAGGAATTTTGGTGTA 104582456 >seq38 Length=209695328 Score = 114 bits (126), Expect = 6e-24 Identities = 89/106 (84%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||| ||| ||| |||||||||||||||||| || | Sbjct 120585179 GGAAAAGAAACTAACCAGGATTCCCTCTGTAGCGGTGAGTGAACAGGGAAGAGCGCATCA 120585238 Query 61 CCGAATCCCCGCCCCGCG----GTGGGGCGCGGGACATGTGGCGTA 102 | ||||||||| |||| | |||||| | |||| ||||||| || Sbjct 120585239 CTGAATCCCCGTCCCGTGGGGTGTGGGGTGTGGGAAATGTGGCATA 120585284 >seq73 Length=52630461 Score = 84.2 bits (92), Expect = 1e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 2 GAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGC 61 ||||||||| |||||||||||||||||||||| || ||||| |||||||| ||||| | | Sbjct 37858720 GAAAAGAAATTAACCAGGATTCCCTCAGTAACAGCAAGTGAGCAGGGAAG-GCCCAACAC 37858778 Query 62 CGAATCCCCG-CCCCGCGGTGGGGCGCGGGACATGTGG 98 | |||||| | ||| | |||| | || | |||||| Sbjct 37858779 CAAATCCCTGATCCCATGTTGGGATGGGGAAAATGTGG 37858816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230399825040