Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq60 255 9e-66 seq78 242 6e-62 seq40 214 3e-53 seq46 205 1e-50 seq70 201 2e-49 seq72 194 3e-47 seq52 149 1e-33 seq38 132 8e-29 >seq60 Length=24207467 Score = 255 bits (282), Expect = 9e-66 Identities = 210/252 (83%), Gaps = 14/252 (6%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 5217497 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 5217439 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| || | |||||| | |||| | |||||||||||||| | | || ||| || Sbjct 5217438 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC--TC 5217382 Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | |||| ||| |||||| | | |||||||||||||||||||||||||||| Sbjct 5217381 G--GGGGTCGCATAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGA 5217324 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 |||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 5217323 CAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGC 5217264 Query 247 TATCAATCTGTC 258 |||||||||||| Sbjct 5217263 TATCAATCTGTC 5217252 >seq78 Length=264820526 Score = 242 bits (268), Expect = 6e-62 Identities = 207/252 (82%), Gaps = 14/252 (6%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | ||||| | || | ||||||||||||||||||||||||||||||| | Sbjct 76621484 GTCAGTGTAGCACACGTGCAGACCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 76621542 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| ||| | ||||| | |||| | |||||||||||||| | | || || | || Sbjct 76621543 CAATCTTGGGT-GGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGAC--TGCTC 76621599 Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | |||| |||||| ||| | | ||||||||||||||| |||||||||||| Sbjct 76621600 G--GGGGTTGCATAACTATTTGGCATGCCAGAGTCTCGTTCGTTATCAGAATTAACCAGA 76621657 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 76621658 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGC 76621717 Query 247 TATCAATCTGTC 258 |||||||||||| Sbjct 76621718 TATCAATCTGTC 76621729 Score = 223 bits (246), Expect = 6e-56 Identities = 201/248 (81%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||| |||| |||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 105045030 GTCAGTGAAGCGTGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 105044972 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT--AG 132 ||| || ||| | |||| | |||| | |||||||||||| | | ||| |||| || Sbjct 105044971 CAATCT-CCAGTAGCTGAATGCCACTTGTCCCTCTAAGACGTTGGACACTGACCACTCAG 105044913 Query 133 TCGATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 || ||| |||||| | | ||||| ||| |||||||||||||||||||||| Sbjct 105044912 GGCTTGCATAACTAGTTAGCATGCCAGAGTCTCATTCATTATCGGAATTAACCAGACAAA 105044853 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 |||||||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||| Sbjct 105044852 TCACTCCACCAACTAAGATCGGCCATGCACCACCAGCCACAGAATTGAGAAAGAGCTATC 105044793 Query 251 AATCTGTC 258 || ||||| Sbjct 105044792 AAACTGTC 105044785 Score = 170 bits (188), Expect = 3e-40 Identities = 108/117 (92%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||| ||| | | ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 76638526 CTATTTGGCATGCCAGAGTCTCGTTCGTTATCAGAATTAACCAGACAAATCACTCCACCA 76638585 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 76638586 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 76638642 >seq40 Length=78824398 Score = 214 bits (236), Expect = 3e-53 Identities = 199/248 (80%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||| ||||| |||| |||| |||||||||||| |||||||||||||| ||| | Sbjct 38062711 GTCAGTGCAGCGCATGTGCAGCCCCAGACATCTAAGGGCTTCACAGACCTGTTAATGC-T 38062769 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGT 133 ||||||| | ||||| | |||| | || ||| ||||||| | | || ||| | | Sbjct 38062770 CAAACTTAGGT-GGCTGAACGCCACTGGTTCCTTTAAGAAGTTGGACGCCGACCGCTTGG 38062828 Query 134 CGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | | ||| |||||| | | ||||| |||||||| ||||||||||||||||| Sbjct 38062829 GGGTCGCATAACTAGTTAGCATGCCAGAGTCTCATTCGTTATTGGAATTAACCAGACAAA 38062888 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 ||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 38062889 TCATTCCACCAACTAAGAACAGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTATC 38062948 Query 251 AATCTGTC 258 |||||||| Sbjct 38062949 AATCTGTC 38062956 Score = 201 bits (222), Expect = 2e-49 Identities = 195/247 (79%), Gaps = 18/247 (7%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||| || ||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 41500396 TCAGTGTAGTGCACGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 41500338 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | |||||| | |||| | |||||||||||||| | | || ||| | | Sbjct 41500337 AATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC--TTG 41500281 Query 136 ATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 |||| ||| |||||| | | ||||| || ||||| |||||||||||||| Sbjct 41500280 --GGGGTCACACAACTAGTTAGCATGCCAGAGTCTCATTTGTTATTGGAATTAACCAGAC 41500223 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||||||||||||| |||||||||||||| |||||||| |||||| |||||||||| Sbjct 41500222 AAATCACTCCACCAA----GAACGGCCATGCACTACCACCCACAGAATCGAGAAAGAGCT 41500167 Query 248 ATCAATC 254 ||||||| Sbjct 41500166 ATCAATC 41500160 Score = 131 bits (144), Expect = 3e-28 Identities = 163/221 (74%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 47 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCC 106 ||||||||||| ||| |||||||||| |||| || | |||||| | | || | ||||| Sbjct 52211376 TAAGGGCATCATAGATCTGTTATTGC-TCAATCT-CAGGTGGCTGAATGTCACTTGTCCC 52211319 Query 107 TCTAAGAAGCCAGCCACCAACCATAGTCGATGGGG--------CTATTTAGCAGGTTAAG 158 | ||||||| ||||||| ||| |||| ||| |||||| | | Sbjct 52211318 TTTAAGAAGTTGATTGCCAACCAC--TCGGGGGGGTCACATAACTAGTTAGCATGCCAGA 52211261 Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| |||||| |||||||||||| ||| | ||||||||| ||||||| |||||| Sbjct 52211260 CTCTCACCCGTTATTGGAATTAACCAGGCAACTTGCTCCACCAAGTAAGAACAGCCATGT 52211201 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCC 259 | ||||||||| ||||| || ||||||||| ||||||||| Sbjct 52211200 AGCACCACCCACAGAATTGAGGAAGAGCTATTAATCTGTCC 52211160 >seq46 Length=49293797 Score = 205 bits (226), Expect = 1e-50 Identities = 198/250 (79%), Gaps = 12/250 (5%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||| ||||| |||| | |||| |||||||||||||||||||||||||| | Sbjct 28357207 GTCAGTGTAGCGCACGTGCAGCCCCGGACATGTAAGGGCATCACAGACCTGTTATTGC-T 28357149 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| || | |||||| | |||| | ||||||||||||| | | || || | || Sbjct 28357148 CAATCT-CGGGTGGCTGAATGCCACTTGTCCCTCTAAGAATTTGGACGCCGAC--TGCTC 28357092 Query 135 GATGGGG------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || | ||| |||||| | | ||||| ||| |||| ||||||||||| ||| Sbjct 28357091 GAGGTTCGCATAACTAGTTAGCATGCCAGAGTCTCATTCTTTATTGGAATTAACCAAACA 28357032 Query 189 AA--TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 || ||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| Sbjct 28357031 AAAATCACTCCACCAACTAAGAATGGCCATGCACCACCACCCACAGAATCGAGAAAGAGC 28356972 Query 247 TATCAATCTG 256 | |||||||| Sbjct 28356971 TGTCAATCTG 28356962 Score = 201 bits (222), Expect = 2e-49 Identities = 198/253 (78%), Gaps = 22/253 (9%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| || |||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 7968679 GTCAGTGTAGCACGTGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 7968621 Query 75 CAAACTTCCATTGGCTGGAAG-CCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 ||| || | |||| || | ||| |||||||||| | ||| ||| | Sbjct 7968620 CAATCT--------CGGGAACACCGCTTGTCTCTCTAAGAAGTTGGACACTGACCGC--T 7968571 Query 134 CGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 || |||| ||| | |||| | | |||| |||||||||||||||||||||| Sbjct 7968570 CG--GGGGTCGCATAACTAGTGAGCATGCCAGAGTCTTGTTCGTTATCGGAATTAACCAG 7968513 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 ||||||| ||||||||||||| ||||||| |||||||||||||| ||||| ||||||||| Sbjct 7968512 ACAAATCGCTCCACCAACTAAAAACGGCCGTGCACCACCACCCACAGAATTAAGAAAGAG 7968453 Query 246 CTATCAATCTGTC 258 ||||||||||||| Sbjct 7968452 CTATCAATCTGTC 7968440 >seq70 Length=183555969 Score = 201 bits (222), Expect = 2e-49 Identities = 196/248 (79%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | | ||||||| | ||| ||||||||||||||||||||||||||| | Sbjct 16568883 GTCAGTGTAGCACACAGGCGGCCCTGGACACCTAAGGGCATCACAGACCTGTTATTGC-T 16568825 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC--CATAG 132 ||| || | |||| | | ||| | |||||||||||||| | | || | || Sbjct 16568824 CAATCT-CAGGTGGCCGAACTCCACTTGTCCCTCTAAGAAGTTGGATGCTGACTGCTCAG 16568766 Query 133 TCGATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | || ||| |||||| | ||||| ||| ||||| |||||||| ||||||| Sbjct 16568765 GGGTTGCACAACTAGTTAGCATACCAGAGTCTCATTCTTTATCAGAATTAACTAGACAAA 16568706 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 16568705 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTATC 16568646 Query 251 AATCTGTC 258 ||||| || Sbjct 16568645 AATCTTTC 16568638 >seq72 Length=50748683 Score = 194 bits (214), Expect = 3e-47 Identities = 202/263 (77%), Gaps = 18/263 (7%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 || ||||||||||| | | ||| |||| |||||||||||||||||||||||||||||| Sbjct 27218293 TCAGTCAGTGTAGCACACATGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTG 27218234 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT- 130 | |||| || ||| | |||| | |||| | |||||||||||| | | ||| |||| Sbjct 27218233 C-TCAATCT-CCAGTAGCTGAATGCCACTTGTCCCTCTAAGACGTTGGACACTGACCACT 27218176 Query 131 -AGTCGATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || || ||| |||||| | | ||||| ||| ||||||||||||||||||| Sbjct 27218175 CAGGGCTTGCATAACTAGTTAGCATGCCAGAGTCTCATTCATTATCGGAATTAACCAGAC 27218116 Query 188 AAAT------------CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 |||| | |||||||||||||||||| |||||||||| |||||| ||||| Sbjct 27218115 AAATTGCCAGATGAATCGCTCCACCAACTAAGAACGTCCATGCACCATCACCCACAGAAT 27218056 Query 236 CAAGAAAGAGCTATCAATCTGTC 258 | ||||||||||||||||||||| Sbjct 27218055 CGAGAAAGAGCTATCAATCTGTC 27218033 >seq52 Length=57331580 Score = 149 bits (164), Expect = 1e-33 Identities = 164/215 (76%), Gaps = 15/215 (7%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| ||| |||| |||| | |||||||||||||||||||||||||||||| || Sbjct 21999249 GTCAGTGTAGTGCGTGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 21999307 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC-ATAGT 133 ||| | || |||||| | ||| | |||||||||||||| | | |||||| | | Sbjct 21999308 CAATC-TCGGGTGGCTGAACACCACTTGTCCCTCTAAGAAGTTGGACTCCAACCGCTCGG 21999366 Query 134 CGATGG---GGCTATTTAGCAGGTTAA---------GGTCTCGTTCGTTATCGGAATTAA 181 | | | |||| |||||| | || || || ||||||||||||||||| Sbjct 21999367 GGGTCGCATAGCTAGTTAGCATGCCAAACATGCCAGAGTTTCATTCGTTATCGGAATTAA 21999426 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 |||| ||||| ||||||||||||||||||||||| Sbjct 21999427 CCAGCCAAATTGCTCCACCAACTAAGAACGGCCAT 21999461 >seq38 Length=209695328 Score = 132 bits (146), Expect = 8e-29 Identities = 90/100 (90%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| |||| ||||| ||||||||||||||||| |||||||||||||||| |||||||| Sbjct 9909896 GTCTTGTTCATTATCAGAATTAACCAGACAAATTGCTCCACCAACTAAGAATGGCCATGC 9909837 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||||| ||||||||||||| ||||||| Sbjct 9909836 ACCACCACCCACAGAATTGAGAAAGAGCTATC-ATCTGTC 9909798 Score = 75.2 bits (82), Expect = 2e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 || |||| |||||||| ||||| ||||| | || ||| ||||||| ||||| |||| Sbjct 64032849 AACTAACTGGACAAATCGCTCCATCAACTTAAAAAGGCGCTGCACCAGTACCCACAGAAA 64032790 Query 236 CAAGAAAGAGCTATCAATCTGTCCTC 261 ||| ||||||||||| ||| ||| || Sbjct 64032789 CAACAAAGAGCTATCGATCCGTCTTC 64032764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796799374761