Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq40 325 7e-87 seq70 316 3e-84 seq78 233 3e-59 seq68 230 4e-58 seq75 224 2e-56 seq57 203 6e-50 seq38 179 6e-43 seq76 176 8e-42 seq47 158 2e-36 seq65 114 2e-23 seq73 113 8e-23 seq77 102 1e-19 seq72 75.2 2e-11 >seq40 Length=78824398 Score = 325 bits (360), Expect = 7e-87 Identities = 250/295 (85%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 36792823 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 36792882 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 36792883 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAGCGCTTGGTG 36792942 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 36792943 AATTCTGCTTTACAATGATAGGGAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 36793002 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| || Sbjct 36793003 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAATTTTTCTGACACCTCCTGCT 36793062 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | ||||||| ||||| |||||||| ||| |||||||| Sbjct 36793063 TAAAACCCAAAAAGTCAGAAGGATCATGAGGCCCCACTTTCACGGTCTGTATTCA 36793117 Score = 282 bits (312), Expect = 7e-74 Identities = 223/265 (84%), Gaps = 2/265 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 38050132 TCATCAGTAGAGTAAAACTAACCTGTCTCATGACAGTCTAAACCCAGCTCACGTTTCCTA 38050191 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||| |||| |||||||||||| |||||||||||||| || Sbjct 38050192 TTAGTGGGTGAACAATCCAGAGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGA 38050251 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||| |||||| || |||||||||||||||||| |||||||| ||||||||| Sbjct 38050252 CATCGAAGGAT-AAAAAGTGACATCGCTATGAACGCTTGGCCGCCACAAGACAGTTATCC 38050310 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCT-CAAATTTCGAGGGACTAAAGGATCGATAG 269 ||||||||||||||||| |||||| || | || | | | | |||||| | || Sbjct 38050311 CTGTGGTAACTTTTCTGACACCTCCTGCTTAGAACCCCCAAAAGTCAGAAGGATTGTGAG 38050370 Query 270 GCCACACTTTCATGGTTTGTATTCA 294 ||| | |||||| ||| |||| ||| Sbjct 38050371 GCCCCGCTTTCACGGTCTGTAATCA 38050395 >seq70 Length=183555969 Score = 316 bits (350), Expect = 3e-84 Identities = 248/295 (84%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 139265948 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 139266007 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | Sbjct 139266008 ACGACGGTCTAAACCCAGCTCACATTCCCTATTAGTGGGTGAACAATCCAATGCTTGGTG 139266067 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||| |||||||||||||||||| || |||||| Sbjct 139266068 AATTCTGCTTCACAATGATAGGAAGAGCCAGCATCGAAGGATCAAAAAGTGACTTCGCTA 139266127 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||||| |||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 139266128 TGAACACTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 139266187 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | || | | | |||||||| ||||| |||||||||||| |||||||| Sbjct 139266188 TAAAGCCCAAAAAGTCAGAAGGATCGTGAGGCCCCACTTTCATGGTCTGTATTCA 139266242 >seq78 Length=264820526 Score = 233 bits (258), Expect = 3e-59 Identities = 213/266 (80%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||| ||||||||||| ||||||| ||||||| |||||||| |||||||| Sbjct 105061104 TCATCAGTAGGGTTAAACTAACCTGATTCATGACCGTCTAAATCCAGCTCAAGTTCCCTA 105061045 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||| | | |||||||||| ||||||||||||||| | Sbjct 105061044 TTAGTGGGTGAACAATCCAACGCCTGGTGCATTCTGCTTCATAATGATAGGAAGAGCCAA 105060985 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| || |||||||||| | ||| | |||| | ||||||| |||||||||||||||| Sbjct 105060984 TATCAAACAATCAAAAAGCGATGTCACCGTGAATGTTTGGCTGTCACAAGCCAGTTATCC 105060925 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTC-GAGGGACTAAAGGATCGATAG 269 |||||||| |||| || ||||| | |||||| | | | | ||||| | || Sbjct 105060924 TTGTGGTAAATTTTTTGACACCT-TCTGCTCAAAACCCAAAAAGTCAGGAGGATTGTGAG 105060866 Query 270 GCCACACTTTCATGGTTTGTATTCAC 295 | | |||||||||||||||||||| Sbjct 105060865 GTCCTGCTTTCATGGTTTGTATTCAC 105060840 Score = 114 bits (126), Expect = 2e-23 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 145 AGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204 |||| ||| ||||||||||||| || | ||||||||| |||||||||||||||| || Sbjct 133565450 AGCCAACACTGAAGGATCAAAAAATGACTTTGCTATGAACACTTGGCTGCCACAAGCAAG 133565509 Query 205 TTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATC 264 ||||||||||||||||||||||| |||||| || | ||| | | | | ||||||| Sbjct 133565510 TTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAAGTCACAAGGATC 133565569 Query 265 GATAGGCCACACT 277 ||||| |||| Sbjct 133565570 ATGAGGCCCCACT 133565582 >seq68 Length=189227759 Score = 230 bits (254), Expect = 4e-58 Identities = 177/210 (84%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95 |||||||||||||||||||| |||||||| |||||| |||||||||||||||| ||||| Sbjct 11231673 AGTAGGGTAAAACTAACCTGACTCATGACAATCTAAAGCCAGCTCACGTTCCCTCTTAGT 11231614 Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 |||||| |||||||| |||| ||||||||||||| |||| |||||||||||||| | Sbjct 11231613 GGGTGACCAATCCAATGCTTGGTGAATTCTGCTTCGCAATGACAGGAAGAGCCGACAGCA 11231554 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 |||||||||| || || |||||| ||| ||||||| |||||||||||||| ||||| Sbjct 11231553 AAGGATCAAACAGTGACATCGCTACGAATGCTTGGCCATCACAAGCCAGTTATTACTGTG 11231494 Query 216 GTAACTTTTCTGGCACCTCTAGCCTCAAAT 245 ||| |||||||| ||| || || | |||| Sbjct 11231493 GTAGCTTTTCTGACACGTCCTGCTTTAAAT 11231464 >seq75 Length=82161327 Score = 224 bits (248), Expect = 2e-56 Identities = 172/204 (84%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||| || || |||||| ||| || |||| || |||| | |||||||| Sbjct 45655939 TCATCAGTAGGGTAAAGCTCACTTGTCTCGTGATGGGCTAACCCTAGCTTATGTTCCCTA 45655998 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 | |||||||||| |||||| ||| |||||||| || ||||| |||||||| || Sbjct 45655999 TCAGTGGGTGAATAATCCAGTCCTTGGTAAATTCTGCGTCACAATGATGGGAAGAGCTGA 45656058 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| |||||||||||||| || || ||||||| |||||||||||||||||||||||||| Sbjct 45656059 CATTGAAGGATCAAAAAGTGACATCTCTATGAATGCTTGGCTGCCACAAGCCAGTTATCC 45656118 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 ||||||||||||||||| |||||| Sbjct 45656119 CTGTGGTAACTTTTCTGCCACCTC 45656142 >seq57 Length=27084703 Score = 203 bits (224), Expect = 6e-50 Identities = 167/202 (83%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| ||||||||||||||| ||||| ||| ||||| Sbjct 5718051 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAACTCACATTCTCTATT 5717992 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 |||||||||||||||||| | | ||| |||| | || |||||||||| |||| Sbjct 5717991 AGTGGGTGAACAATCCAATGTGTGGTAAATCTTGCTCCACAATCTTAGGAAGAGCTGACA 5717932 Query 153 TCGAAGGATCAAAAA-GCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || ||||||||||| | | | ||| ||||| |||| | |||||||||||||||||| Sbjct 5717931 TCAGAGGATCAAAAAGGGCTCTTTGCTTTGAACACTTGACCACCACAAGCCAGTTATCCC 5717872 Query 212 TGTGGTAACTTTTCTGGCACCT 233 |||||||| ||||||| ||||| Sbjct 5717871 TGTGGTAATTTTTCTGACACCT 5717850 >seq38 Length=209695328 Score = 179 bits (198), Expect = 6e-43 Identities = 158/196 (81%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||| ||||||||| || ||| ||||| || |||||| || |||||||||||||| Sbjct 208617584 GTCATCTGTAGGGTAAC-CTGGCCTTTCTCAAGATAGTCTAAGCCTAGCTCACGTTCCCT 208617526 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||||||||||||||||||| || | ||||||||||||| |||||||||||||| | Sbjct 208617525 GTTAGTGGGTGAACAATCCAGTGCACAGCGAATTCTGCTTCACCATGATAGGAAGAGCTG 208617466 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 | | |||| |||||||||| || ||||||| |||| |||| |||||| |||||| Sbjct 208617465 GCCTTGAAGAGGCAAAAAGCAATGTTACTATGAATACTTGACTGCTACAAGCTGGTTATC 208617406 Query 210 CCTGTGGTAACTTTTC 225 |||| |||| |||||| Sbjct 208617405 CCTGGGGTATCTTTTC 208617390 >seq76 Length=68174232 Score = 176 bits (194), Expect = 8e-42 Identities = 204/269 (76%), Gaps = 12/269 (4%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||| ||||||||||||||| |||||||| || |||||| ||| ||| ||||| || Sbjct 53856391 TCATCAGTTGGGTAAAACTAACCTTTCTCATGATGGACTAAACTCAGATCATGTTCCATA 53856332 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 | | ||| | | |||||| ||| |||||||| || | |||| ||||| || || Sbjct 53856331 TGGGAGGGCAATCGATCCAATACTTGGTGAATTCTGTTTTGCAATGACAGGAAAAGGTGA 53856272 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || |||||||| ||||| || |||||||| ||||||| || |||||||||||||| Sbjct 53856271 CAGTGAAGGATC-AAAAGTGACACTGCTATGAATACTTGGCTACCTCAAGCCAGTTATCC 53856213 Query 211 CTGTGGTAACTTTTCTGGCACCT-CT--AG-CCTCAAATTTCGAGGGACTAAAGGATCGA 266 ||||||||||| ||||| ||||| || || || | || || || ||||||| Sbjct 53856212 CTGTGGTAACTCTTCTGACACCTGCTTAAGACCCCCAAAATC-AG------AAGGATCAT 53856160 Query 267 TAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||| | |||||||| ||||||||| Sbjct 53856159 GAGGCCCTGCCTTCATGGTCTGTATTCAC 53856131 >seq47 Length=35171843 Score = 158 bits (174), Expect = 2e-36 Identities = 122/145 (84%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 34726097 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 34726156 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||||| |||||| || | ||| | | | |||||||| || Sbjct 34726157 CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAG 34726216 Query 270 GCCACACTTTCATGGTTTGTATTCA 294 ||| | |||||| ||| |||||||| Sbjct 34726217 GCCCCGCTTTCACGGTCTGTATTCA 34726241 >seq65 Length=17427606 Score = 114 bits (126), Expect = 2e-23 Identities = 84/98 (86%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| |||||||| |||||||||||||||| ||||||||| |||||| |||||||| Sbjct 15390626 TCATCAACAGGGTAAATTTAACCTGTCTCATGACTGTCTAAACCTAGCTCATGTTCCCTA 15390685 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCT 128 ||||||| ||| ||| ||||||||| | |||||||| Sbjct 15390686 TTAGTGGATGAGCAACCCAACGCTTGGTGGATTCTGCT 15390723 >seq73 Length=52630461 Score = 113 bits (124), Expect = 8e-23 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 39 AGGGTAAAACTAACCTGTCTCATG-ACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGG 97 |||||||||||||| || ||||| | ||| |||||| |||| ||||||| || || Sbjct 6068609 AGGGTAAAACTAACTAGTTTCATGGATGGTGTAAACCTAGCTTGTGTTCCCTGTTCACGG 6068550 Query 98 GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAA 157 || |||| |||| ||| || ||||||| ||||||||||||||| ||| ||| Sbjct 6068549 GTCCTCAATGCAACACTTGGTGAGCTCTGCTTTCTGATGATAGGAAGAGCCAACACTGAA 6068490 Query 158 GGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217 |||| ||||| ||| || |||||||| || || |||||| |||| | || |||| Sbjct 6068489 GGATTGAAAAGTAACTTCACTATGAACACTCAGCCACCACAAACCAGCT-GGACTCTGGT 6068431 Query 218 AACTTTTCTGGCACCT 233 ||||| ||| || || Sbjct 6068430 GACTTTGCTGACATCT 6068415 >seq77 Length=119004422 Score = 102 bits (112), Expect = 1e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 81 ACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAG 140 || |||||||||| | ||||||||| || |||| |||||||||||| ||||||| Sbjct 38344776 ACATTCCCTATTACCGAGTGAACAATAGAAGGCTTTATGAATTCTGCTTCAAGATGATAG 38344717 Query 141 GAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 ||||||| ||||| |||||||||||||| || || |||||||| Sbjct 38344716 GAAGAGCTGACATTGAAGGATCAAAAAGTGACATCTCTATGAAC 38344673 >seq72 Length=50748683 Score = 75.2 bits (82), Expect = 2e-11 Identities = 73/92 (79%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAG--CCAGTTATCCCT 212 |||| ||||||| ||||| | |||| || ||||| ||| |||| |||||| ||| | Sbjct 36912147 GAAGTATCAAAATGCAACATTGCTAAAAATTCTTGGTTGCTACAAAGTCCAGTTTTCC-T 36912089 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 ||||||| ||||||||||||||| || | ||| Sbjct 36912088 GTGGTAATTTTTCTGGCACCTCTTGCTTAAAA 36912057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854399307936