Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13]
81 sequences; 2,640,792,433 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq40 325 7e-87
seq70 316 3e-84
seq78 233 3e-59
seq68 230 4e-58
seq75 224 2e-56
seq57 203 6e-50
seq38 179 6e-43
seq76 176 8e-42
seq47 158 2e-36
seq65 114 2e-23
seq73 113 8e-23
seq77 102 1e-19
seq72 75.2 2e-11
>seq40
Length=78824398
Score = 325 bits (360), Expect = 7e-87
Identities = 250/295 (85%), Gaps = 1/295 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| |||| | || |||||||||||||||||||||||||||||
Sbjct 36792823 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 36792882
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 36792883 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAGCGCTTGGTG 36792942
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
|||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 36792943 AATTCTGCTTTACAATGATAGGGAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 36793002
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| ||
Sbjct 36793003 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAATTTTTCTGACACCTCCTGCT 36793062
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| ||| | | | ||||||| ||||| |||||||| ||| ||||||||
Sbjct 36793063 TAAAACCCAAAAAGTCAGAAGGATCATGAGGCCCCACTTTCACGGTCTGTATTCA 36793117
Score = 282 bits (312), Expect = 7e-74
Identities = 223/265 (84%), Gaps = 2/265 (1%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 38050132 TCATCAGTAGAGTAAAACTAACCTGTCTCATGACAGTCTAAACCCAGCTCACGTTTCCTA 38050191
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||| |||| |||||||||||| |||||||||||||| ||
Sbjct 38050192 TTAGTGGGTGAACAATCCAGAGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGA 38050251
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||||||||||| |||||| || |||||||||||||||||| |||||||| |||||||||
Sbjct 38050252 CATCGAAGGAT-AAAAAGTGACATCGCTATGAACGCTTGGCCGCCACAAGACAGTTATCC 38050310
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCT-CAAATTTCGAGGGACTAAAGGATCGATAG 269
||||||||||||||||| |||||| || | || | | | | |||||| | ||
Sbjct 38050311 CTGTGGTAACTTTTCTGACACCTCCTGCTTAGAACCCCCAAAAGTCAGAAGGATTGTGAG 38050370
Query 270 GCCACACTTTCATGGTTTGTATTCA 294
||| | |||||| ||| |||| |||
Sbjct 38050371 GCCCCGCTTTCACGGTCTGTAATCA 38050395
>seq70
Length=183555969
Score = 316 bits (350), Expect = 3e-84
Identities = 248/295 (84%), Gaps = 1/295 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| |||| | || |||||||||||||||||||||||||||||
Sbjct 139265948 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 139266007
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
Sbjct 139266008 ACGACGGTCTAAACCCAGCTCACATTCCCTATTAGTGGGTGAACAATCCAATGCTTGGTG 139266067
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| ||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 139266068 AATTCTGCTTCACAATGATAGGAAGAGCCAGCATCGAAGGATCAAAAAGTGACTTCGCTA 139266127
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
||||| |||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 139266128 TGAACACTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 139266187
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| || | | | |||||||| ||||| |||||||||||| ||||||||
Sbjct 139266188 TAAAGCCCAAAAAGTCAGAAGGATCGTGAGGCCCCACTTTCATGGTCTGTATTCA 139266242
>seq78
Length=264820526
Score = 233 bits (258), Expect = 3e-59
Identities = 213/266 (80%), Gaps = 2/266 (1%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||||||||| ||||||||||| ||||||| ||||||| |||||||| ||||||||
Sbjct 105061104 TCATCAGTAGGGTTAAACTAACCTGATTCATGACCGTCTAAATCCAGCTCAAGTTCCCTA 105061045
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||||||| | | |||||||||| ||||||||||||||| |
Sbjct 105061044 TTAGTGGGTGAACAATCCAACGCCTGGTGCATTCTGCTTCATAATGATAGGAAGAGCCAA 105060985
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||| || |||||||||| | ||| | |||| | ||||||| ||||||||||||||||
Sbjct 105060984 TATCAAACAATCAAAAAGCGATGTCACCGTGAATGTTTGGCTGTCACAAGCCAGTTATCC 105060925
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTC-GAGGGACTAAAGGATCGATAG 269
|||||||| |||| || ||||| | |||||| | | | | ||||| | ||
Sbjct 105060924 TTGTGGTAAATTTTTTGACACCT-TCTGCTCAAAACCCAAAAAGTCAGGAGGATTGTGAG 105060866
Query 270 GCCACACTTTCATGGTTTGTATTCAC 295
| | ||||||||||||||||||||
Sbjct 105060865 GTCCTGCTTTCATGGTTTGTATTCAC 105060840
Score = 114 bits (126), Expect = 2e-23
Identities = 105/133 (79%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 145 AGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204
|||| ||| ||||||||||||| || | ||||||||| |||||||||||||||| ||
Sbjct 133565450 AGCCAACACTGAAGGATCAAAAAATGACTTTGCTATGAACACTTGGCTGCCACAAGCAAG 133565509
Query 205 TTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATC 264
||||||||||||||||||||||| |||||| || | ||| | | | | |||||||
Sbjct 133565510 TTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAAGTCACAAGGATC 133565569
Query 265 GATAGGCCACACT 277
||||| ||||
Sbjct 133565570 ATGAGGCCCCACT 133565582
>seq68
Length=189227759
Score = 230 bits (254), Expect = 4e-58
Identities = 177/210 (84%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95
|||||||||||||||||||| |||||||| |||||| |||||||||||||||| |||||
Sbjct 11231673 AGTAGGGTAAAACTAACCTGACTCATGACAATCTAAAGCCAGCTCACGTTCCCTCTTAGT 11231614
Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155
|||||| |||||||| |||| ||||||||||||| |||| |||||||||||||| |
Sbjct 11231613 GGGTGACCAATCCAATGCTTGGTGAATTCTGCTTCGCAATGACAGGAAGAGCCGACAGCA 11231554
Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215
|||||||||| || || |||||| ||| ||||||| |||||||||||||| |||||
Sbjct 11231553 AAGGATCAAACAGTGACATCGCTACGAATGCTTGGCCATCACAAGCCAGTTATTACTGTG 11231494
Query 216 GTAACTTTTCTGGCACCTCTAGCCTCAAAT 245
||| |||||||| ||| || || | ||||
Sbjct 11231493 GTAGCTTTTCTGACACGTCCTGCTTTAAAT 11231464
>seq75
Length=82161327
Score = 224 bits (248), Expect = 2e-56
Identities = 172/204 (84%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||| || || |||||| ||| || |||| || |||| | ||||||||
Sbjct 45655939 TCATCAGTAGGGTAAAGCTCACTTGTCTCGTGATGGGCTAACCCTAGCTTATGTTCCCTA 45655998
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
| |||||||||| |||||| ||| |||||||| || ||||| |||||||| ||
Sbjct 45655999 TCAGTGGGTGAATAATCCAGTCCTTGGTAAATTCTGCGTCACAATGATGGGAAGAGCTGA 45656058
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||| |||||||||||||| || || ||||||| ||||||||||||||||||||||||||
Sbjct 45656059 CATTGAAGGATCAAAAAGTGACATCTCTATGAATGCTTGGCTGCCACAAGCCAGTTATCC 45656118
Query 211 CTGTGGTAACTTTTCTGGCACCTC 234
||||||||||||||||| ||||||
Sbjct 45656119 CTGTGGTAACTTTTCTGCCACCTC 45656142
>seq57
Length=27084703
Score = 203 bits (224), Expect = 6e-50
Identities = 167/202 (83%), Gaps = 1/202 (0%)
Strand=Plus/Minus
Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||||||||||||||||||||| ||||||||||||||| ||||| ||| |||||
Sbjct 5718051 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAACTCACATTCTCTATT 5717992
Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152
|||||||||||||||||| | | ||| |||| | || |||||||||| ||||
Sbjct 5717991 AGTGGGTGAACAATCCAATGTGTGGTAAATCTTGCTCCACAATCTTAGGAAGAGCTGACA 5717932
Query 153 TCGAAGGATCAAAAA-GCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
|| ||||||||||| | | | ||| ||||| |||| | ||||||||||||||||||
Sbjct 5717931 TCAGAGGATCAAAAAGGGCTCTTTGCTTTGAACACTTGACCACCACAAGCCAGTTATCCC 5717872
Query 212 TGTGGTAACTTTTCTGGCACCT 233
|||||||| ||||||| |||||
Sbjct 5717871 TGTGGTAATTTTTCTGACACCT 5717850
>seq38
Length=209695328
Score = 179 bits (198), Expect = 6e-43
Identities = 158/196 (81%), Gaps = 1/196 (1%)
Strand=Plus/Minus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
|||||| ||||||||| || ||| ||||| || |||||| || ||||||||||||||
Sbjct 208617584 GTCATCTGTAGGGTAAC-CTGGCCTTTCTCAAGATAGTCTAAGCCTAGCTCACGTTCCCT 208617526
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
||||||||||||||||||| || | ||||||||||||| |||||||||||||| |
Sbjct 208617525 GTTAGTGGGTGAACAATCCAGTGCACAGCGAATTCTGCTTCACCATGATAGGAAGAGCTG 208617466
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
| | |||| |||||||||| || ||||||| |||| |||| |||||| ||||||
Sbjct 208617465 GCCTTGAAGAGGCAAAAAGCAATGTTACTATGAATACTTGACTGCTACAAGCTGGTTATC 208617406
Query 210 CCTGTGGTAACTTTTC 225
|||| |||| ||||||
Sbjct 208617405 CCTGGGGTATCTTTTC 208617390
>seq76
Length=68174232
Score = 176 bits (194), Expect = 8e-42
Identities = 204/269 (76%), Gaps = 12/269 (4%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||| ||||||||||||||| |||||||| || |||||| ||| ||| ||||| ||
Sbjct 53856391 TCATCAGTTGGGTAAAACTAACCTTTCTCATGATGGACTAAACTCAGATCATGTTCCATA 53856332
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
| | ||| | | |||||| ||| |||||||| || | |||| ||||| || ||
Sbjct 53856331 TGGGAGGGCAATCGATCCAATACTTGGTGAATTCTGTTTTGCAATGACAGGAAAAGGTGA 53856272
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|| |||||||| ||||| || |||||||| ||||||| || ||||||||||||||
Sbjct 53856271 CAGTGAAGGATC-AAAAGTGACACTGCTATGAATACTTGGCTACCTCAAGCCAGTTATCC 53856213
Query 211 CTGTGGTAACTTTTCTGGCACCT-CT--AG-CCTCAAATTTCGAGGGACTAAAGGATCGA 266
||||||||||| ||||| ||||| || || || | || || || |||||||
Sbjct 53856212 CTGTGGTAACTCTTCTGACACCTGCTTAAGACCCCCAAAATC-AG------AAGGATCAT 53856160
Query 267 TAGGCCACACTTTCATGGTTTGTATTCAC 295
||||| | |||||||| |||||||||
Sbjct 53856159 GAGGCCCTGCCTTCATGGTCTGTATTCAC 53856131
>seq47
Length=35171843
Score = 158 bits (174), Expect = 2e-36
Identities = 122/145 (84%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 34726097 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 34726156
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269
|||||||||||||||||| |||||| || | ||| | | | |||||||| ||
Sbjct 34726157 CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAG 34726216
Query 270 GCCACACTTTCATGGTTTGTATTCA 294
||| | |||||| ||| ||||||||
Sbjct 34726217 GCCCCGCTTTCACGGTCTGTATTCA 34726241
>seq65
Length=17427606
Score = 114 bits (126), Expect = 2e-23
Identities = 84/98 (86%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||| |||||||| |||||||||||||||| ||||||||| |||||| ||||||||
Sbjct 15390626 TCATCAACAGGGTAAATTTAACCTGTCTCATGACTGTCTAAACCTAGCTCATGTTCCCTA 15390685
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCT 128
||||||| ||| ||| ||||||||| | ||||||||
Sbjct 15390686 TTAGTGGATGAGCAACCCAACGCTTGGTGGATTCTGCT 15390723
>seq73
Length=52630461
Score = 113 bits (124), Expect = 8e-23
Identities = 144/196 (73%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 39 AGGGTAAAACTAACCTGTCTCATG-ACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGG 97
|||||||||||||| || ||||| | ||| |||||| |||| ||||||| || ||
Sbjct 6068609 AGGGTAAAACTAACTAGTTTCATGGATGGTGTAAACCTAGCTTGTGTTCCCTGTTCACGG 6068550
Query 98 GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAA 157
|| |||| |||| ||| || ||||||| ||||||||||||||| ||| |||
Sbjct 6068549 GTCCTCAATGCAACACTTGGTGAGCTCTGCTTTCTGATGATAGGAAGAGCCAACACTGAA 6068490
Query 158 GGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217
|||| ||||| ||| || |||||||| || || |||||| |||| | || ||||
Sbjct 6068489 GGATTGAAAAGTAACTTCACTATGAACACTCAGCCACCACAAACCAGCT-GGACTCTGGT 6068431
Query 218 AACTTTTCTGGCACCT 233
||||| ||| || ||
Sbjct 6068430 GACTTTGCTGACATCT 6068415
>seq77
Length=119004422
Score = 102 bits (112), Expect = 1e-19
Identities = 85/104 (82%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 81 ACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAG 140
|| |||||||||| | ||||||||| || |||| |||||||||||| |||||||
Sbjct 38344776 ACATTCCCTATTACCGAGTGAACAATAGAAGGCTTTATGAATTCTGCTTCAAGATGATAG 38344717
Query 141 GAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184
||||||| ||||| |||||||||||||| || || ||||||||
Sbjct 38344716 GAAGAGCTGACATTGAAGGATCAAAAAGTGACATCTCTATGAAC 38344673
>seq72
Length=50748683
Score = 75.2 bits (82), Expect = 2e-11
Identities = 73/92 (79%), Gaps = 3/92 (3%)
Strand=Plus/Minus
Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAG--CCAGTTATCCCT 212
|||| ||||||| ||||| | |||| || ||||| ||| |||| |||||| ||| |
Sbjct 36912147 GAAGTATCAAAATGCAACATTGCTAAAAATTCTTGGTTGCTACAAAGTCCAGTTTTCC-T 36912089
Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244
||||||| ||||||||||||||| || | |||
Sbjct 36912088 GTGGTAATTTTTCTGGCACCTCTTGCTTAAAA 36912057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854399307936
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