Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq60 82.4 5e-14 seq39 82.4 5e-14 >seq60 Length=24207467 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| | ||||||||| ||||||||||||||||||| Sbjct 5222891 CTCACTAAACCATC-CAATCGGTAGTA-GTGACGGGCGGTGTGTACAAAGGGCAGGGACT 5222834 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 5222833 TAAT-CAACGCGAGCT 5222819 >seq39 Length=85626906 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||| ||||| ||||||||||||||||||| Sbjct 49422193 CTCACTAAACCATC-CAATCGGTAGTA-GCGACAGGCGGTGTGTACAAAGGGCAGGGACT 49422250 Query 109 TAATACAACGCAAGCT 124 |||| |||| |||||| Sbjct 49422251 TAAT-CAACTCAAGCT 49422265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300799771580