Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq60 105 7e-21 seq46 105 7e-21 seq40 105 7e-21 seq78 100 3e-19 seq77 86.0 6e-15 seq75 84.2 2e-14 seq70 78.8 1e-12 >seq60 Length=24207467 Score = 105 bits (116), Expect = 7e-21 Identities = 130/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | || |||||| | | || Sbjct 5216763 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 5216822 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 5216823 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 5216880 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 5216881 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 5216934 >seq46 Length=49293797 Score = 105 bits (116), Expect = 7e-21 Identities = 130/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||| ||||| |||| |||||| | | || Sbjct 28356470 TTTACTTTGAAAAAATTAGAGTGTTCAAAACAGGCTGGTTGCCAGAATACTACAGCTGGG 28356529 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 28356530 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 28356587 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 28356588 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 28356641 Score = 95.1 bits (104), Expect = 1e-17 Identities = 82/99 (83%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | || |||||| | | || Sbjct 7962459 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 7962518 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||| ||||||||| | |||||||||||||| ||||| Sbjct 7962519 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT 7962556 >seq40 Length=78824398 Score = 105 bits (116), Expect = 7e-21 Identities = 130/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | || |||||| | | || Sbjct 41499667 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 41499726 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 41499727 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 41499784 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 41499785 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 41499838 >seq78 Length=264820526 Score = 100 bits (110), Expect = 3e-19 Identities = 129/174 (74%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | || |||||| | | || Sbjct 76639131 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 76639072 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 76639071 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGTAGCCATGATT 76639014 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | ||||| | ||||| | | |||||||||||||||| Sbjct 76639013 AAGAGGGACGGCTGGGGGCATTTGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 76638960 Score = 96.9 bits (106), Expect = 4e-18 Identities = 128/174 (74%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||| | ||||||||||||| | || |||||| | | || Sbjct 76622218 TTTACTTTGAAAAAATTAGCGTGTTCAAAGCAGGCTGGTCCCTGGAATACTCCAGCTAGG 76622159 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 76622158 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGTAGCCATGATT 76622101 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | ||||| | ||||| | | |||||||||||||||| Sbjct 76622100 AAGAGGGACGGCTGGGGGCATTTGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 76622047 Score = 73.4 bits (80), Expect = 4e-11 Identities = 102/138 (74%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG-CTCGAATACATTACCATGG 71 ||||| |||||||| |||||| |||||||||| || || || ||| || | | || Sbjct 105044301 TTTACGTTGAAAAATTTAGAGTGTTCAAAGCAAGCTGGTGACTGGAACACTCCAGCTAGG 105044360 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 ||| | |||||||||| | | |||||||||||| ||||| | ||| | | ||||| Sbjct 105044361 AATCA-AGAATAGGAC-TCCAGTTCTATTTTGTTGGTTT-TTGGAACTGGGGCCATGATT 105044417 Query 132 AATACGGATAGTCGGGGG 149 || | ||| |||||||| Sbjct 105044418 AAGAGGGACGGTCGGGGG 105044435 >seq77 Length=119004422 Score = 86.0 bits (94), Expect = 6e-15 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | ||| |||||| | | || Sbjct 9226832 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTGGCTAGAATACTCCAGCTAGG 9226891 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||| |||||| | | ||||||| |||||| ||||| Sbjct 9226892 AATAATGAAATAGGGC-TCCGGTTCTGTTTTGTTGGTTT 9226929 >seq75 Length=82161327 Score = 84.2 bits (92), Expect = 2e-14 Identities = 81/100 (81%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | || |||||| | | || Sbjct 6183580 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 6183639 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTG-TAGGTTT 110 |||||| ||||||||| | | ||||||||||| | ||||| Sbjct 6183640 AATAATGGAATAGGAC-TCCAGTTCTATTTTGCTGGGTTT 6183678 >seq70 Length=183555969 Score = 78.8 bits (86), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||| || ||||||||||||| | || |||||| | | || Sbjct 16568151 TTTACTTTGAAAAAATT--AGTGTTCAAAGCAGGCTGATCACTGGAATACTCCAACTAGG 16568208 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||| ||||||||| | ||||||||||||| ||||| Sbjct 16568209 AATAATGGAATAGGAC-TCTGGTTCTATTTTGTTGGTTT 16568246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511999598240