Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13]
81 sequences; 2,640,792,433 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq60 105 7e-21
seq46 105 7e-21
seq40 105 7e-21
seq78 100 3e-19
seq77 86.0 6e-15
seq75 84.2 2e-14
seq70 78.8 1e-12
>seq60
Length=24207467
Score = 105 bits (116), Expect = 7e-21
Identities = 130/174 (75%), Gaps = 3/174 (2%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71
||||||||||||||||||||| ||||||||||||| | || |||||| | | ||
Sbjct 5216763 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 5216822
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131
|||||| ||||||||| | |||||||||||||| ||||| | ||| | | |||||
Sbjct 5216823 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 5216880
Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
|| | ||| | |||||| | ||||| | | ||||||||||||||||
Sbjct 5216881 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 5216934
>seq46
Length=49293797
Score = 105 bits (116), Expect = 7e-21
Identities = 130/174 (75%), Gaps = 3/174 (2%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71
||||||||||||||||||||| ||||||| ||||| |||| |||||| | | ||
Sbjct 28356470 TTTACTTTGAAAAAATTAGAGTGTTCAAAACAGGCTGGTTGCCAGAATACTACAGCTGGG 28356529
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131
|||||| ||||||||| | |||||||||||||| ||||| | ||| | | |||||
Sbjct 28356530 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 28356587
Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
|| | ||| | |||||| | ||||| | | ||||||||||||||||
Sbjct 28356588 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 28356641
Score = 95.1 bits (104), Expect = 1e-17
Identities = 82/99 (83%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71
||||||||||||||||||||| ||||||||||||| | || |||||| | | ||
Sbjct 7962459 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 7962518
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110
|||||| ||||||||| | |||||||||||||| |||||
Sbjct 7962519 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT 7962556
>seq40
Length=78824398
Score = 105 bits (116), Expect = 7e-21
Identities = 130/174 (75%), Gaps = 3/174 (2%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71
||||||||||||||||||||| ||||||||||||| | || |||||| | | ||
Sbjct 41499667 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 41499726
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131
|||||| ||||||||| | |||||||||||||| ||||| | ||| | | |||||
Sbjct 41499727 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 41499784
Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
|| | ||| | |||||| | ||||| | | ||||||||||||||||
Sbjct 41499785 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 41499838
>seq78
Length=264820526
Score = 100 bits (110), Expect = 3e-19
Identities = 129/174 (74%), Gaps = 3/174 (2%)
Strand=Plus/Minus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71
||||||||||||||||||||| ||||||||||||| | || |||||| | | ||
Sbjct 76639131 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 76639072
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131
|||||| ||||||||| | |||||||||||||| ||||| | ||| | | |||||
Sbjct 76639071 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGTAGCCATGATT 76639014
Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
|| | ||| | ||||| | ||||| | | ||||||||||||||||
Sbjct 76639013 AAGAGGGACGGCTGGGGGCATTTGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 76638960
Score = 96.9 bits (106), Expect = 4e-18
Identities = 128/174 (74%), Gaps = 3/174 (2%)
Strand=Plus/Minus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71
||||||||||||||||||| | ||||||||||||| | || |||||| | | ||
Sbjct 76622218 TTTACTTTGAAAAAATTAGCGTGTTCAAAGCAGGCTGGTCCCTGGAATACTCCAGCTAGG 76622159
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131
|||||| ||||||||| | |||||||||||||| ||||| | ||| | | |||||
Sbjct 76622158 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGTAGCCATGATT 76622101
Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
|| | ||| | ||||| | ||||| | | ||||||||||||||||
Sbjct 76622100 AAGAGGGACGGCTGGGGGCATTTGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 76622047
Score = 73.4 bits (80), Expect = 4e-11
Identities = 102/138 (74%), Gaps = 4/138 (3%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG-CTCGAATACATTACCATGG 71
||||| |||||||| |||||| |||||||||| || || || ||| || | | ||
Sbjct 105044301 TTTACGTTGAAAAATTTAGAGTGTTCAAAGCAAGCTGGTGACTGGAACACTCCAGCTAGG 105044360
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131
||| | |||||||||| | | |||||||||||| ||||| | ||| | | |||||
Sbjct 105044361 AATCA-AGAATAGGAC-TCCAGTTCTATTTTGTTGGTTT-TTGGAACTGGGGCCATGATT 105044417
Query 132 AATACGGATAGTCGGGGG 149
|| | ||| ||||||||
Sbjct 105044418 AAGAGGGACGGTCGGGGG 105044435
>seq77
Length=119004422
Score = 86.0 bits (94), Expect = 6e-15
Identities = 80/99 (81%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71
||||||||||||||||||||| ||||||||||||| | ||| |||||| | | ||
Sbjct 9226832 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTGGCTAGAATACTCCAGCTAGG 9226891
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110
|||||| |||||| | | ||||||| |||||| |||||
Sbjct 9226892 AATAATGAAATAGGGC-TCCGGTTCTGTTTTGTTGGTTT 9226929
>seq75
Length=82161327
Score = 84.2 bits (92), Expect = 2e-14
Identities = 81/100 (81%), Gaps = 3/100 (3%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71
||||||||||||||||||||| ||||||||||||| | || |||||| | | ||
Sbjct 6183580 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 6183639
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTG-TAGGTTT 110
|||||| ||||||||| | | ||||||||||| | |||||
Sbjct 6183640 AATAATGGAATAGGAC-TCCAGTTCTATTTTGCTGGGTTT 6183678
>seq70
Length=183555969
Score = 78.8 bits (86), Expect = 1e-12
Identities = 79/99 (80%), Gaps = 4/99 (4%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71
||||||||||||||||| || ||||||||||||| | || |||||| | | ||
Sbjct 16568151 TTTACTTTGAAAAAATT--AGTGTTCAAAGCAGGCTGATCACTGGAATACTCCAACTAGG 16568208
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110
|||||| ||||||||| | ||||||||||||| |||||
Sbjct 16568209 AATAATGGAATAGGAC-TCTGGTTCTATTTTGTTGGTTT 16568246
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511999598240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |