Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq60 197 3e-48 seq78 176 9e-42 seq72 163 5e-38 seq46 159 7e-37 seq40 143 5e-32 seq70 86.0 1e-14 seq52 86.0 1e-14 seq39 82.4 1e-13 >seq60 Length=24207467 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 5217399 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 5217456 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | Sbjct 5217457 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGTCTAC 5217516 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| |||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 5217517 CCTACGCCGACAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 5217576 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| |||||||||| Sbjct 5217577 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT 5217636 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 5217637 AAGTCCCTGCCCTTTGTA 5217654 Score = 134 bits (148), Expect = 3e-29 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 |||||||| | |||| ||||| ||||||||||||| | |||| || | ||| | Sbjct 5222659 TTAGATGTCCGGGGCTGCACGTGCGCTACACTGACTGGCTCAACATGTGTCTACCCTACG 5222718 Query 197 CCGGAAGGTCTGGGTAATCTTGTT-AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 ||| |||| ||||||| || ||| || | | ||||| ||||||| | | |||||||| Sbjct 5222719 CCGACAGGTGTGGGTAA-CTCGTTGAACCCCATTCGTGATGGGGATCGGGGGTTGCAATT 5222777 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| | | | ||| |||||| | |||||| ||| | ||| ||| ||||||||||| ||| Sbjct 5222778 ATTCCCCATGAACAAGGAATTCTCAGTAAGTGCGGGACATAAGCTCGCGTTGATTAAGTC 5222837 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 5222838 CCTGCCCTTTGTA 5222850 >seq78 Length=264820526 Score = 176 bits (194), Expect = 9e-42 Identities = 196/258 (76%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | ||| ||||| |||||||||||||||| Sbjct 76621582 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACCCAAGATTGAG-CAATAACAGGTCTGTG 76621525 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | || | ||||| | ||||||||||| | || || || | Sbjct 76621524 ATGCCCTTAGATGTCCGGGTCTGCACGTGTGCTACACTGACTGGCTCAGCGTGTGTCTAC 76621465 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| |||| |||||| | | |||| | || || | ||||| | | |||| Sbjct 76621464 CCTACGCCGACAGGTGCGGGTAACCCATTGAAACCCATTCATGATAGGGATCGGGGATTG 76621405 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| || ||||| ||| ||||||||| Sbjct 76621404 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCAGGTCATAAGCTTGCGTTGATT 76621345 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 76621344 AAGTCCCTGCCCTTTGTA 76621327 Score = 154 bits (170), Expect = 3e-35 Identities = 190/256 (74%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||| | ||| | ||| |||| | ||||| |||||||||||||||||| Sbjct 105044934 TCTTAGAGGGACAAGTGGCATTCAGCTACTGGA-GATTGAG-CAATAACAGGTCTGTGAT 105044991 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||| | |||| |||||| |||| ||||||| | | || | || | || Sbjct 105044992 GCCCTTAGATGTCCAGGGCTGCACGCACGCTTCACTGACTGGGTCAGTGTGTATCTACCC 105045051 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 | ||| |||| ||||| | | || | | | ||| ||||||| | | ||| || Sbjct 105045052 TATACCGACAGGTGCAGGTAACCCGTTGAACCCCATTTGTGATGGGGATTGGGTATTCCA 105045111 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 |||||| | | | |||||||||| || |||||| ||| ||||| ||| | | ||||||| Sbjct 105045112 ATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCTCATTGATTAA 105045171 Query 313 GTCCCTGCCCTTTGTA 328 |||||| |||||||| Sbjct 105045172 GTCCCTAGCCTTTGTA 105045187 >seq72 Length=50748683 Score = 163 bits (180), Expect = 5e-38 Identities = 192/256 (75%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||| | ||| | ||| |||| | ||||| |||||||||||||||||| Sbjct 27218194 TCTTAGAGGGACAAGTGGCATTCAGCTACTGGA-GATTGAG-CAATAACAGGTCTGTGAT 27218251 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||| |||| ||| | | ||||||||||| || | || || | || Sbjct 27218252 GCCCTTAGATGTCTGGGGCTGCATGTGTGCTACACTGACTGACTCGGCGTGTGTCTGCCC 27218311 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 | || | || | ||||||| | | || | | | ||| || |||| | | |||||| Sbjct 27218312 TACGCTGACAGTTGTGGGTAACCCATTGAACCCCATTTGTGATGTGGATCGGGGATTGCA 27218371 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 |||||| | | | || ||||||| ||||||||| ||| ||||| ||| | ||||||||| Sbjct 27218372 ATTATTCCCCATGAATGAGGAATTCCTAGTAAGTGCGGGTCATAAGCTCACGTTGATTAA 27218431 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 27218432 GTCCCTGCCCTTTGTA 27218447 >seq46 Length=49293797 Score = 159 bits (176), Expect = 7e-37 Identities = 194/258 (75%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 73 TTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||| Sbjct 28357110 TTCTTAGAGGGACAAGTGGCATTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTGA 28357167 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 |||||||| |||| | |||| ||||| ||||||||||||| | || || || | | Sbjct 28357168 TGCCCTTACATGTCCGGGGCTGCACGTGCGCTACACTGACTGGCTCAGCGTGTGTCTACC 28357227 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT-CGTGCTGGGGATAGAGCATTG 250 || |||| |||| ||||||| | ||| ||| | | ||| ||||||| | |||| Sbjct 28357228 CTACGCCGACAGGTGTGGGTAA-CCCGTTGAACCCCATATGTGATGGGGATCAGGGATTG 28357286 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||| | | | | || |||||| || |||||| ||| ||||| ||| | ||||||| Sbjct 28357287 CAATTAATCCCCATGAATGAGGAAATCCCAGTAAGTGCGGGTCATAAGCTCATGTTGATT 28357346 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 28357347 AAGTCCCTGCCCTTTGTA 28357364 Score = 150 bits (166), Expect = 3e-34 Identities = 168/223 (75%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| |||| || ||||| Sbjct 7968615 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACACGTGCTAC 7968673 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| | || || || | ||| || | |||| |||||| || | || | Sbjct 7968674 ACTGACTGGCTCAGCGTGTGTCTACCCTATGCTGACAGGTGCGGGTAACCTGTTGAACCC 7968733 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||| ||||||| | |||||||||||| | | | || ||||||| | |||||| Sbjct 7968734 CATTCGTGATGGGGATCAGGGATTGCAATTATTCCCCATGAATGAGGAATTTCCAGTAAG 7968793 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||||| ||| || ||||||| ||||| || ||||||| Sbjct 7968794 TGCGAGTCATAAGCTTGCATTGATTAAGTCCCAGCTCTTTGTA 7968836 >seq40 Length=78824398 Score = 143 bits (158), Expect = 5e-32 Identities = 167/224 (75%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 ||||||||| || |||||||||||||| |||||||||||| |||| |||| ||||| Sbjct 38062776 AAGTTTGAG-CATTAACAGGTCTGTGAAGCCCTTAGATGTCTGGGGCTGCACATGCGCTG 38062718 Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 ||||||| | || || || | ||| ||| | || ||||| || | || | Sbjct 38062717 CACTGACTGGCTCAGCGTGTGTCTACCCTACGCCAACACGTGCCGGTAACCTGTTGAACC 38062658 Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 | | ||| ||||||| | | |||||||||||| | | | ||| |||||| | ||||| Sbjct 38062657 CCATTTGTGATGGGGATTGGGGATTGCAATTATTCCCCATGAACAAGGAATTTCCAGTAA 38062598 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||| ||||| ||| ||| ||||||| |||||||||||||||| Sbjct 38062597 GTGCGAGTCATAAGCTCGCATTGATTAAGTCCCTGCCCTTTGTA 38062554 Score = 118 bits (130), Expect = 2e-24 Identities = 166/229 (72%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 41500299 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 41500356 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||| || ||||||||| | || || || | Sbjct 41500357 ATGCCCTTAGATGTCCAGGGCTGCACGTGCACTACACTGATTGGCTCAGCGTGTGTCTAG 41500416 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||| |||| |||||| | | | | | ||||| ||||||| | | |||| Sbjct 41500417 CCTACACCGACAGGTGCGGGTAACCCGTTGAGCCCCATTCGTGATGGGGATTGGGGATTG 41500476 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 |||||||| | | || ||||||| || |||||| | | ||||| ||| Sbjct 41500477 CAATTATTCCCCAAGAATGAGGAATTCCCAGTAAGTGTGAGTCATAAGC 41500525 >seq70 Length=183555969 Score = 86.0 bits (94), Expect = 1e-14 Identities = 127/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 139 AGATGTTCTGGGCC-GCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCACCTTGG 196 |||||| | ||||| |||||||| |||||||||| | || | || || ||| || Sbjct 136618723 AGATGT-CAGGGCCTGCACGCGCACTACACTGACTGGCTCAGCATGTGTCTACACTGTG- 136618780 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 || |||| ||||||||| | || | | || || ||||||| | | |||||||||| Sbjct 136618781 CCAACAGGTGTGGGTAATCCGTTGAACCCCATTCATGATGGGGATCGGGGATTGCAATTA 136618840 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 || | ||| ||||| |||| || |||||| || |||| ||| || || ||||| Sbjct 136618841 TTCCCCTTAAACGAAGAATTCCCAGTAAGTGCAGATCATAAGCTCGTGTGGATTA 136618895 Score = 84.2 bits (92), Expect = 4e-14 Identities = 157/224 (70%), Gaps = 10/224 (4%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||| ||| | ||||||| | | ||||| Sbjct 16568819 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGGTGTCCAGGGCCGCCTGTGTGCTAC 16568877 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTT-GGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 |||||| | || | || | ||||| || |||| || ||| | ||| ||| Sbjct 16568878 ACTGACTGGCTCAGCATGTGTCT-ACCTTACACCAATAGGTGCGGATAA-CCCGTTGAAC 16568935 Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 | | ||| | ||| |||||| ||||| | | | || |||||| || || || Sbjct 16568936 CCCAT-TTGC-----AATGAGGATTGCAGTTATTTCCCATGAATGAGGAACACCCAGGAA 16568989 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | || |||| || | |||||||| | |||||||||||||| Sbjct 16568990 GTGCAGTTCATAAGTTCATGTTGATTAAGCCCCTGCCCTTTGTA 16569033 >seq52 Length=57331580 Score = 86.0 bits (94), Expect = 1e-14 Identities = 82/101 (81%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | || | |||| || | ||||| |||||||||||||||| Sbjct 21999347 CTTCTTAGAGGGACAAGTGGTGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 21999290 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||||||||| | |||| |||| ||| |||||||||| Sbjct 21999289 ATGCCCTTAGATGTCCAGGGCTGCACACGCACTACACTGAC 21999249 >seq39 Length=85626906 Score = 82.4 bits (90), Expect = 1e-13 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 || || ||||||| | |||||||||||| | | | || || |||| || || ||| || Sbjct 49422333 TCATGATGGGGATCAGGGATTGCAATTATTCCCCATGAATGAAGAATTCCCAGGAAGTGC 49422274 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| | |||||||| |||||||||||||||| Sbjct 49422273 GGGTCATAAGCTTGAGTTGATTAAGTCCCTGCCCTTTGTA 49422234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199232768