Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13]
81 sequences; 2,640,792,433 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq60 197 3e-48
seq78 176 9e-42
seq72 163 5e-38
seq46 159 7e-37
seq40 143 5e-32
seq70 86.0 1e-14
seq52 86.0 1e-14
seq39 82.4 1e-13
>seq60
Length=24207467
Score = 197 bits (218), Expect = 3e-48
Identities = 201/258 (78%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 5217399 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 5217456
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||||| | || || || |
Sbjct 5217457 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGTCTAC 5217516
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| |||| |||| |||||| | | || | | ||||| ||||||| | | ||||
Sbjct 5217517 CCTACGCCGACAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 5217576
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||||
Sbjct 5217577 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT 5217636
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 5217637 AAGTCCCTGCCCTTTGTA 5217654
Score = 134 bits (148), Expect = 3e-29
Identities = 147/193 (76%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196
|||||||| | |||| ||||| ||||||||||||| | |||| || | ||| |
Sbjct 5222659 TTAGATGTCCGGGGCTGCACGTGCGCTACACTGACTGGCTCAACATGTGTCTACCCTACG 5222718
Query 197 CCGGAAGGTCTGGGTAATCTTGTT-AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255
||| |||| ||||||| || ||| || | | ||||| ||||||| | | ||||||||
Sbjct 5222719 CCGACAGGTGTGGGTAA-CTCGTTGAACCCCATTCGTGATGGGGATCGGGGGTTGCAATT 5222777
Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315
||| | | | ||| |||||| | |||||| ||| | ||| ||| ||||||||||| |||
Sbjct 5222778 ATTCCCCATGAACAAGGAATTCTCAGTAAGTGCGGGACATAAGCTCGCGTTGATTAAGTC 5222837
Query 316 CCTGCCCTTTGTA 328
|||||||||||||
Sbjct 5222838 CCTGCCCTTTGTA 5222850
>seq78
Length=264820526
Score = 176 bits (194), Expect = 9e-42
Identities = 196/258 (76%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | ||| ||||| ||||||||||||||||
Sbjct 76621582 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACCCAAGATTGAG-CAATAACAGGTCTGTG 76621525
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | || | ||||| | ||||||||||| | || || || |
Sbjct 76621524 ATGCCCTTAGATGTCCGGGTCTGCACGTGTGCTACACTGACTGGCTCAGCGTGTGTCTAC 76621465
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| |||| |||| |||||| | | |||| | || || | ||||| | | ||||
Sbjct 76621464 CCTACGCCGACAGGTGCGGGTAACCCATTGAAACCCATTCATGATAGGGATCGGGGATTG 76621405
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | |||||||||| || |||||| || ||||| ||| |||||||||
Sbjct 76621404 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCAGGTCATAAGCTTGCGTTGATT 76621345
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 76621344 AAGTCCCTGCCCTTTGTA 76621327
Score = 154 bits (170), Expect = 3e-35
Identities = 190/256 (74%), Gaps = 3/256 (1%)
Strand=Plus/Plus
Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132
|||||||||||| | ||| | ||| |||| | ||||| ||||||||||||||||||
Sbjct 105044934 TCTTAGAGGGACAAGTGGCATTCAGCTACTGGA-GATTGAG-CAATAACAGGTCTGTGAT 105044991
Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192
|||||||||||| | |||| |||||| |||| ||||||| | | || | || | ||
Sbjct 105044992 GCCCTTAGATGTCCAGGGCTGCACGCACGCTTCACTGACTGGGTCAGTGTGTATCTACCC 105045051
Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252
| ||| |||| ||||| | | || | | | ||| ||||||| | | ||| ||
Sbjct 105045052 TATACCGACAGGTGCAGGTAACCCGTTGAACCCCATTTGTGATGGGGATTGGGTATTCCA 105045111
Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312
|||||| | | | |||||||||| || |||||| ||| ||||| ||| | | |||||||
Sbjct 105045112 ATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCTCATTGATTAA 105045171
Query 313 GTCCCTGCCCTTTGTA 328
|||||| ||||||||
Sbjct 105045172 GTCCCTAGCCTTTGTA 105045187
>seq72
Length=50748683
Score = 163 bits (180), Expect = 5e-38
Identities = 192/256 (75%), Gaps = 3/256 (1%)
Strand=Plus/Plus
Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132
|||||||||||| | ||| | ||| |||| | ||||| ||||||||||||||||||
Sbjct 27218194 TCTTAGAGGGACAAGTGGCATTCAGCTACTGGA-GATTGAG-CAATAACAGGTCTGTGAT 27218251
Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192
|||||||||||| |||| ||| | | ||||||||||| || | || || | ||
Sbjct 27218252 GCCCTTAGATGTCTGGGGCTGCATGTGTGCTACACTGACTGACTCGGCGTGTGTCTGCCC 27218311
Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252
| || | || | ||||||| | | || | | | ||| || |||| | | ||||||
Sbjct 27218312 TACGCTGACAGTTGTGGGTAACCCATTGAACCCCATTTGTGATGTGGATCGGGGATTGCA 27218371
Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312
|||||| | | | || ||||||| ||||||||| ||| ||||| ||| | |||||||||
Sbjct 27218372 ATTATTCCCCATGAATGAGGAATTCCTAGTAAGTGCGGGTCATAAGCTCACGTTGATTAA 27218431
Query 313 GTCCCTGCCCTTTGTA 328
||||||||||||||||
Sbjct 27218432 GTCCCTGCCCTTTGTA 27218447
>seq46
Length=49293797
Score = 159 bits (176), Expect = 7e-37
Identities = 194/258 (75%), Gaps = 5/258 (2%)
Strand=Plus/Plus
Query 73 TTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131
||||||||||||| | ||| | |||| || | ||||| |||||||||||||||||
Sbjct 28357110 TTCTTAGAGGGACAAGTGGCATTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTGA 28357167
Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191
|||||||| |||| | |||| ||||| ||||||||||||| | || || || | |
Sbjct 28357168 TGCCCTTACATGTCCGGGGCTGCACGTGCGCTACACTGACTGGCTCAGCGTGTGTCTACC 28357227
Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT-CGTGCTGGGGATAGAGCATTG 250
|| |||| |||| ||||||| | ||| ||| | | ||| ||||||| | ||||
Sbjct 28357228 CTACGCCGACAGGTGTGGGTAA-CCCGTTGAACCCCATATGTGATGGGGATCAGGGATTG 28357286
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||| | | | | || |||||| || |||||| ||| ||||| ||| | |||||||
Sbjct 28357287 CAATTAATCCCCATGAATGAGGAAATCCCAGTAAGTGCGGGTCATAAGCTCATGTTGATT 28357346
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 28357347 AAGTCCCTGCCCTTTGTA 28357364
Score = 150 bits (166), Expect = 3e-34
Identities = 168/223 (75%), Gaps = 1/223 (0%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||||||||||||||||||||||| | |||| |||| || |||||
Sbjct 7968615 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACACGTGCTAC 7968673
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
|||||| | || || || | ||| || | |||| |||||| || | || |
Sbjct 7968674 ACTGACTGGCTCAGCGTGTGTCTACCCTATGCTGACAGGTGCGGGTAACCTGTTGAACCC 7968733
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
| ||||| ||||||| | |||||||||||| | | | || ||||||| | ||||||
Sbjct 7968734 CATTCGTGATGGGGATCAGGGATTGCAATTATTCCCCATGAATGAGGAATTTCCAGTAAG 7968793
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||| ||||| ||| || ||||||| ||||| || |||||||
Sbjct 7968794 TGCGAGTCATAAGCTTGCATTGATTAAGTCCCAGCTCTTTGTA 7968836
>seq40
Length=78824398
Score = 143 bits (158), Expect = 5e-32
Identities = 167/224 (75%), Gaps = 1/224 (0%)
Strand=Plus/Minus
Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164
||||||||| || |||||||||||||| |||||||||||| |||| |||| |||||
Sbjct 38062776 AAGTTTGAG-CATTAACAGGTCTGTGAAGCCCTTAGATGTCTGGGGCTGCACATGCGCTG 38062718
Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224
||||||| | || || || | ||| ||| | || ||||| || | || |
Sbjct 38062717 CACTGACTGGCTCAGCGTGTGTCTACCCTACGCCAACACGTGCCGGTAACCTGTTGAACC 38062658
Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284
| | ||| ||||||| | | |||||||||||| | | | ||| |||||| | |||||
Sbjct 38062657 CCATTTGTGATGGGGATTGGGGATTGCAATTATTCCCCATGAACAAGGAATTTCCAGTAA 38062598
Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||| ||||| ||| ||| ||||||| ||||||||||||||||
Sbjct 38062597 GTGCGAGTCATAAGCTCGCATTGATTAAGTCCCTGCCCTTTGTA 38062554
Score = 118 bits (130), Expect = 2e-24
Identities = 166/229 (72%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 41500299 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 41500356
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||| || ||||||||| | || || || |
Sbjct 41500357 ATGCCCTTAGATGTCCAGGGCTGCACGTGCACTACACTGATTGGCTCAGCGTGTGTCTAG 41500416
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||| |||| |||||| | | | | | ||||| ||||||| | | ||||
Sbjct 41500417 CCTACACCGACAGGTGCGGGTAACCCGTTGAGCCCCATTCGTGATGGGGATTGGGGATTG 41500476
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299
|||||||| | | || ||||||| || |||||| | | ||||| |||
Sbjct 41500477 CAATTATTCCCCAAGAATGAGGAATTCCCAGTAAGTGTGAGTCATAAGC 41500525
>seq70
Length=183555969
Score = 86.0 bits (94), Expect = 1e-14
Identities = 127/175 (73%), Gaps = 4/175 (2%)
Strand=Plus/Plus
Query 139 AGATGTTCTGGGCC-GCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCACCTTGG 196
|||||| | ||||| |||||||| |||||||||| | || | || || ||| ||
Sbjct 136618723 AGATGT-CAGGGCCTGCACGCGCACTACACTGACTGGCTCAGCATGTGTCTACACTGTG- 136618780
Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256
|| |||| ||||||||| | || | | || || ||||||| | | ||||||||||
Sbjct 136618781 CCAACAGGTGTGGGTAATCCGTTGAACCCCATTCATGATGGGGATCGGGGATTGCAATTA 136618840
Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311
|| | ||| ||||| |||| || |||||| || |||| ||| || || |||||
Sbjct 136618841 TTCCCCTTAAACGAAGAATTCCCAGTAAGTGCAGATCATAAGCTCGTGTGGATTA 136618895
Score = 84.2 bits (92), Expect = 4e-14
Identities = 157/224 (70%), Gaps = 10/224 (4%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||||||||||||||||||| ||| | ||||||| | | |||||
Sbjct 16568819 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGGTGTCCAGGGCCGCCTGTGTGCTAC 16568877
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTT-GGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224
|||||| | || | || | ||||| || |||| || ||| | ||| |||
Sbjct 16568878 ACTGACTGGCTCAGCATGTGTCT-ACCTTACACCAATAGGTGCGGATAA-CCCGTTGAAC 16568935
Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284
| | ||| | ||| |||||| ||||| | | | || |||||| || || ||
Sbjct 16568936 CCCAT-TTGC-----AATGAGGATTGCAGTTATTTCCCATGAATGAGGAACACCCAGGAA 16568989
Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| || |||| || | |||||||| | ||||||||||||||
Sbjct 16568990 GTGCAGTTCATAAGTTCATGTTGATTAAGCCCCTGCCCTTTGTA 16569033
>seq52
Length=57331580
Score = 86.0 bits (94), Expect = 1e-14
Identities = 82/101 (81%), Gaps = 3/101 (3%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | || | |||| || | ||||| ||||||||||||||||
Sbjct 21999347 CTTCTTAGAGGGACAAGTGGTGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 21999290
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171
|||||||||||||| | |||| |||| ||| ||||||||||
Sbjct 21999289 ATGCCCTTAGATGTCCAGGGCTGCACACGCACTACACTGAC 21999249
>seq39
Length=85626906
Score = 82.4 bits (90), Expect = 1e-13
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288
|| || ||||||| | |||||||||||| | | | || || |||| || || ||| ||
Sbjct 49422333 TCATGATGGGGATCAGGGATTGCAATTATTCCCCATGAATGAAGAATTCCCAGGAAGTGC 49422274
Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||||| ||| | |||||||| ||||||||||||||||
Sbjct 49422273 GGGTCATAAGCTTGAGTTGATTAAGTCCCTGCCCTTTGTA 49422234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947199232768
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