Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq78 116 3e-21 seq38 86.0 5e-12 >seq78 Length=264820526 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| |||||||| || ||||| |||||||||| ||||| || Sbjct 1194000 GGTGTACTCCACTATTTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTG 1193941 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| || || || | |||||||||| ||| || || || ||||||||| || Sbjct 1193940 GTTGCTCTTCCGGTTACAAGAGTCCTTGTACAGCATATAAGGGGTACCGGTCTCAGTCTG 1193881 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 ||||||||||||||| | ||| || Sbjct 1193880 GGACTCAATGATGGCATACCAGAG 1193857 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| ||||||| || | ||||| |||||||| | Sbjct 1192765 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGCTCCTCCTT 1192706 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||| ||||| ||||||||||| || ||||| || ||||||| Sbjct 1192705 CCCCGTG-TTCTTCTTCAAATCGAGAAACTCAAAGATATCCAAGTGCCACGGCTCCAGGT 1192647 Query 66459 AGATGGCGAACGAGCCC 66475 | ||||| || ||||| Sbjct 1192646 AAATGGCAAA--AGCCC 1192632 >seq38 Length=209695328 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||||||||| ||||| ||||| | | || || || |||||||| || || |||| Sbjct 163306345 TGGAACGTTTTAGCCAGGAAGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGTTTTCAGA 163306286 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| || ||||| ||||| |||||||||||| | || || || || ||||||| Sbjct 163306285 TTCTCATTGAAAATGTTCACTCAGAGATGTACAGTCTGCTAATAGACACTTACATCA 163306229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567607525840